| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3489050 = | 77 (0.830) | 21 (0.230) | 18/596 | 2.9 | 21.4% | coding (1131/1221 nt) | argD | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
TTCTCACGGTTCCACCTACGGCGGTAATCCTCTGGCCTGTGCAGTAGCGGGGGCGGCGTTTGATATCATCAATACCCCTGAAGTGCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3489344‑3489050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCC > NC_000913/4498181‑4498477 TTCTCACGGTTCCACCTACGGCGGTAATCCTCTGGCCTGTGCAGTAGCGGGGGCGGTGTTTGATATCATCAATACCCCTGAAGTGCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGAC < 1:723070/300‑1 tccCGGTTCCACCTACGGCGGTAATCCTCTGGCCTGTGCAGTAGCGGGGGCGGTGTTTGATATCATCAATACCCCTGAAATGCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATTGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGAGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATATGATGCGTTAGACTGG > 2:265761/4‑300 GTTCCACCTACGGCGGTAATCCTCTGGCCTGTGCAGTAGCGGGGGCGGTGTTTGATATCATCAATACCCCTGAAGTGCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCC > 1:658775/1‑300 GTGCAGTAGCGGGGGCGGTGTTTGATATCATCAATACCCCTGAAGTGCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAA > 1:2409/1‑300 GTTTGATATCATCAATACCCCTGAAGTGCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATAC < 1:227237/300‑1 GTGCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGA > 1:163014/1‑300 GCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAAC < 1:313394/300‑1 ATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGA > 1:263265/1‑300 GAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAG < 1:652999/300‑1 GCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAATTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGA < 1:180341/300‑1 accGTACGATGTCTTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAATTAAATAAGTGATAGTCTTAATACTAGTGTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCAGGAGAAACGCAGAAGGCGTACAACACAGGAAAAGATCG > 2:376577/4‑300 ATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGA > 1:301774/1‑300 GTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGG > 1:106397/1‑300 GGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGAC < 1:297167/300‑1 GCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGG > 1:467094/1‑300 GTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAATTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTAGTTGCCCGGCAACATGGTGTAG > 2:8875/1‑300 CGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTNTAGACTAGTCATTGGAGAACAGATGAGTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTC < 2:657682/300‑1 tGTGCTGAATGCCGGACCGGATGTGATGCGTTAGACTGGCCCCCTGAATCTCCATACAACCAATATCACTTAAATAAGGGATAGTCTCAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGTAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCGCCCGCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGTAAGGAAGTCTTACTG < 2:46849/299‑1 GCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTC > 1:155166/1‑300 GCGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTCAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTC > 1:154859/1‑300 CGTTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCC < 1:267863/300‑1 TTCTCACGGTTCCACCTACGGCGGTAATCCTCTGGCCTGTGCAGTAGCGGGGGCGGCGTTTGATATCATCAATACCCCTGAAGTGCTGGAAGGCATTCAGGCGAAACGCCAGCGTTTTGTTGACCATCTGCAGAAGATCGATCAGCAGTACGATGTATTTAGCGATATTCGCGGTATGGGGCTGTTGATTGGCGCAGAGCTGAAACCACAGTACAAAGGTCGGGCGCGTGATTTCCTGTATGCGGGCGCAGAGGCTGGCGTAATGGTGCTGAATGCCGGACCGGATGTGATGCGTt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3489344‑3489050‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGCGTAAGCAATACCAGGAAGGAAGTCTTACTGCTGTCGCCGCCGGAGAACAGGTTGTTCC > NC_000913/4498181‑4498477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |