New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2102943	NA (NA)	16 (0.340)	16/488	1.6	53.3%	noncoding (1/1195 nt)	IS5	repeat region
	?	NC_000913	2111448 =	14 (0.290)					coding (529/900 nt)	rfbD	dTDP‑4‑dehydrorhamnose reductase

CGAGCTGGTGTAGGATAGGCTGTTGTTGGTACTGCGTTGAGCTTGTTGAGTGCAAGGGGAATGCCTGCTTTGCGCGCCTCTTCAAAAACCAGCGCAGCATAATCGTACCAGGTTGTGGTACCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTCGAGTAATGGATAACCCAG  >  NC_000913/2111201‑2111686                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                               cgaGCTGGTGTAGGATAGGCTGTTGTTGGTACTGCGTTGAGCTTGTTGAGTGCAAGGGGAATGCCTGCTTTGCGCGCCTCTTCAAAAACCAGCGCAGCATAATCGTACCAGGTTGTGGTACCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTa                                                                                                                                                                                                                                              >  1:205006/1‑250 (MQ=255)           gcggataagatcgccggccattaccagccttggggtaaaacggctcgatgacttccacaatgttttgccatggcagaatctgctccatgcgggacaagaaaatatcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgaataatgatgaaccctgttctatggctccagatgaaaaacatgaactcaaaaaagggacttgtttgcaccttccCTAATTTTTCACGc                                                                                                                                                                                                                                   >  2:357399‑M2/238‑251 (MQ=255)                      gttgttGGTACTGCGTTGAGCTTGTTGAGTGCAAGGGGAATGCCTGCTTTGCGCGCCTCTTCAAAAACCAGCGCAGCATAATCGTACCAGGTTGTGGTACCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCa                                                                                                                                                                                                                         <  1:263943/250‑1 (MQ=255)                               ttaccagccttggggtaaaacggctcgatgacttccaacatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACAt                                                                                                                                                                                                               >  1:486389‑M2/218‑251 (MQ=255)                                             gttgAGTGCGAGGGGAATGCCTGCTTTGCGCGCCTCTACAAAAACCAGCGCAGCATAATCGTACCAGGTTGTGGTACCACTGGCTACCAAATGGTACAAGCCGGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGAACCAAACTGATCGTTAATAACCGCTAATTCTTCCCGCTCtt                                                                                                                                                                                                                               >  1:261776/1‑221 (MQ=255)                                             gtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGt                                                                                                                                                                                                 <  1:72237‑M2/48‑1 (MQ=255)                                                  acggctcgattacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAGCATCGTTTTGGCGAAGTTAttt                                                                                                                                                                                            <  2:490993‑M2/53‑1 (MQ=255)                                                                tccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGGTATTTCCTTTTCCTGCAt                                                                                                                                                                               <  2:122244‑M2/66‑1 (MQ=255)                                                                  cacnatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTGCCTGCATAGa                                                                                                                                                                            <  2:473403‑M2/69‑1 (MQ=255)                                                                       tgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGAccc                                                                                                                                                                         >  1:130916‑M2/178‑249 (MQ=255)                                                                         cgcgcCTCTTCAAAAACCAGCGCAGCATAATCGTACCAGGTTGTGGTACCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCt                                                                                                                                                                     >  2:301809/1‑251 (MQ=255)                                                                              ctctTCAAAAACCAGCGCAGCATAATCGTACCAGGTTGTGGTACCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTcc                                                                                                                                                                >  1:265286/1‑251 (MQ=255)                                                                                                catgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTcg                                                                                                                                              >  2:180484‑M2/153‑251 (MQ=255)                                                                                                 gcaTAATCGTACCAGGTTGGGGTACCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTcgc                                                                                                                                             <  1:181763/251‑1 (MQ=255)                                                                                                    cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcgccttccCTAATTCCTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCa                                                                                                                                          <  1:338796‑M2/103‑1 (MQ=255)                                                                                                     aaTCGTACCAGGTTGTGGTACCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCa                                                                                                                                          >  1:21554/1‑250 (MQ=255)                                                                                                         gTACCAGGTTGTGGTACCACTGGCTACCAAAGGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATAtt                                                                                                                                     <  2:416162/251‑1 (MQ=255)                                                                                                                        aCCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCttttt                                                                                                                      >  1:76487/1‑251 (MQ=255)                                                                                                                         ccACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCtttttt                                                                                                                     >  2:86385/1‑250 (MQ=255)                                                                                                                                                     cactgtcggcgaagataagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcagatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAAGAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAAc                                                                                          <  1:322562‑M2/151‑1 (MQ=255)                                                                                                                                                                            acacGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGt                                                                  <  1:282331/251‑1 (MQ=255)                                                                                                                                                                             cacGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGtc                                                                 >  1:50113/1‑251 (MQ=255)                                                                                                                                                                                gAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTcc                                                              >  1:72580/1‑251 (MQ=255)                                                                                                                                                                                 catgatcaaccctgttctatggctcccgatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCNcc                                                              >  2:481237‑M2/72‑250 (MQ=255)                                                                                                                                                                                               ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGCAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCg                                               >  1:337118‑M2/58‑251 (MQ=255)                                                                                                                                                                                                     cagccagcAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCAtt                                          <  2:106690/250‑1 (MQ=255)                                                                                                                                                                                                         ccagatgacaaacatgatctcatatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCa                                      <  1:481237‑M2/203‑1 (MQ=255)                                                                                                                                                                                                                             catatcagggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGGCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGt                     <  2:94005‑M2/220‑1 (MQ=255)                                                                                                                                                                                                                                    gggacttgttcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTCGAGTAATGGa          <  2:130916‑M2/231‑1 (MQ=255)                                                                                                                                                                                                                                             tcgcaccttccCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTCGAGTAATGGATAACCCAg  <  1:357399‑M2/239‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                               CGAGCTGGTGTAGGATAGGCTGTTGTTGGTACTGCGTTGAGCTTGTTGAGTGCAAGGGGAATGCCTGCTTTGCGCGCCTCTTCAAAAACCAGCGCAGCATAATCGTACCAGGTTGTGGTACCACTGGCTACCAAATGGTACAAGCCTGCGACATCCGGTTTATTCAGTGCGACACGAATGGCATGTGCTGTACAATCAGCCAGCAGTTCAGCACCTGTTGGCGCACCAAACTGATCGTTAATAACCGCTAATTCTTCACGCTCTTTTGCCAGACGTAACATCGTTTTGGCGAAGTTATTTCCTTTTCCTGCATAGACCCAGCTGGTCCGGAAAATAAGATGCTTCGCGCAATATTCCTGTAACGCTTTTTCTCCGGCTAACTTGGTTTCACCGTAAACATTTAGTGGTGCGGTTGCATCCGTCTCCAGCCATGGCATATCGCCATTTCCAGGGAAGACGTAATCAGTCGAGTAATGGATAACCCAG  >  NC_000913/2111201‑2111686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.