New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2068941 =	NA (NA)	23 (0.480)	22/488	1.0	56.1%	noncoding (1331/1331 nt)	IS2	repeat region
	?	NC_000913	= 2320130	18 (0.380)					coding (88/1827 nt)	atoS	sensor histidine kinase AtoS

GCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGTGCTGGTTATTACAACAAAATGCTGGATGCGATAATCAC  >  NC_000913/2319881‑2320380                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                           gcttacgccagagaaataactggctggcttctacaccatgttgccgggcaacgatggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcctttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatgtaagtgatattggttgtctggagattcagggggccagtctaGCTTa                                                                                                                                                                                                                                                            >  1:41699‑M1/246‑250 (MQ=255)     acgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcaggtggccagtctaGCTTACTAt                                                                                                                                                                                                                                                        >  1:200121‑M1/242‑250 (MQ=255)         ccGCCTCAGGTGACCGATGGAGTGTTGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCGCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgc                                                                                                                                                                                                                                                   >  1:209032‑M2/1‑242 (MQ=255)                        gATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTATCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTAATTGTCCCAACGCTTAtggatttgcccctatatttca                                                                                                                                                                                                                                       <  1:213447‑M2/248‑22 (MQ=255)                                           aGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatctttccagacatctgttatcacttaacc                                                                                                                                                                                                                 <  1:375868‑M2/251‑44 (MQ=255)                                                gcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTg                                                                                                                                                                                                            >  1:460668‑M1/199‑251 (MQ=255)                                                  aaaGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGa                                                                                                                                                                                                           >  2:409107/1‑250 (MQ=255)                                                       gggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcaggtggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGaaaa                                                                                                                                                                                                        <  2:188452‑M1/57‑1 (MQ=255)                                                             ccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGaaaaa                                                                                                                                                                                               >  1:159462‑M1/186‑251 (MQ=255)                                                                          ttcaaagctctgctgaacaattgcgctcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTg                                                                                                                                                                                  <  2:345504‑M1/79‑1 (MQ=255)                                                                                     gctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggacctaagacatcaatcatctgttctccaatgtctagtctaaaaactagtattaagtgtatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTACTATTTGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTGTCTTCCGTGGTCAACCTg                                                                                                                                                                         >  2:89797‑M1/162‑249 (MQ=255)                                                                                     atatGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCt                                                                                                                                                                       >  1:215590/1‑251 (MQ=255)                                                                                         gATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc                                                                                                                                                                   <  2:523401‑M2/251‑90 (MQ=255)                                                                                         gATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc                                                                                                                                                                   <  2:441608‑M2/251‑90 (MQ=255)                                                                                         aacaattgcgagcgtttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaatctagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTTCTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAAt                                                                                                                                                                   >  2:293383‑M1/158‑251 (MQ=255)                                                                                            ccacCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAg                                                                                                                                                                <  2:163174/250‑1 (MQ=255)                                                                                                  ccgAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAATGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACt                                                                                                                                                           >  2:370728/1‑250 (MQ=255)                                                                                                   cgAGAAATCATCACCTTAAACTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcact                                                                                                                                                          <  1:172983‑M2/250‑99 (MQ=255)                                                                                                        aaTCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGTTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGCGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGAACTAGGCGAt                                                                                                                                                    >  2:85910/1‑251 (MQ=255)                                                                                                         atcatcACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATc                                                                                                                                                   <  1:409107/251‑1 (MQ=255)                                                                                                           catcaCCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccatgacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatg                                                                                                                                                 >  1:487794‑M2/1‑144 (MQ=255)                                                                                                               gtgggaggccgtctgcgtttctccggcactaagacatcaatcatctgttctccaatgactagtctaacaactagtattaagactatcacttatttaagtgatattggctgtctggagattcagggggccagtctaGCTTACTATTGGTTATATCGTAGCAACGGAAGGACGTTCAGCAGCCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGATTAATCAGGCACTAGGCGATCGCTatt                                                                                                                                             <  2:204229‑M1/116‑2 (MQ=255)                                                                                                                    aaCCTCTGATAATCGTCATAGACCGGACAAGACTAGTGGATTTCAGCATGCAGTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATTCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTGCTGACGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGAtct                                                                                                                                         <  2:505542/250‑1 (MQ=255)                                                                                                                           gATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattccagtggcgagcgataacccagcgcactatgcggatgccattcgttctaatgc                                                                                                                                 <  2:386186‑M2/251‑124 (MQ=255)                                                                                                                            tgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcaggggtcccggctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAACAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCg                                                                                                                                 <  1:154570‑M1/128‑1 (MQ=255)                                                                                                                                 ttctccggccctaatacatcaatcatctgttctcgaatgactagtctaaaaactagtattaagactatcacttatttaagtgatagtgattgtctggagattcagggggccagtctaGCTTACTATTTGTTATATCGTAGAAATGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTTCCGTTGTCAACCTGTTTAATCAGTCACTAGGCGATGGCTATGATCTCTACATCGACTTa                                                                                                                            >  2:64442‑M1/118‑250 (MQ=255)                                                                                                                                 cGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgccctatgcggatgccattcgttataatgctcgaac                                                                                                                           <  1:64012‑M2/251‑130 (MQ=255)                                                                                                                                  gTCATATACCGGACAAGACTAGTGGATTGCAGCATGCATTATATGAAGTGGATTTATCCACTCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatattgccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgctgataccattcgttataatgctcgaacg                                                                                                                          >  2:213447‑M2/1‑121 (MQ=255)                                                                                                                                     atatACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttatactgctcgaacgcct                                                                                                                       <  2:161295‑M2/251‑134 (MQ=255)                                                                                                                                                 aGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttct                                                                                                           >  1:4381‑M2/1‑106 (MQ=255)                                                                                                                                                      atcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCcgcg                                                                                                      >  1:315643‑M1/97‑251 (MQ=255)                                                                                                                                                      aGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCcgcg                                                                                                      >  2:316288/1‑251 (MQ=255)                                                                                                                                                             ttCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcgcttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgctgatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgtt                                                                                                >  1:30761‑M2/1‑94 (MQ=255)                                                                                                                                                                 gcatgcatTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCa                                                                                           <  2:418582/251‑1 (MQ=255)                                                                                                                                                                  catgcatTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCg                                                                                                                                                                                                                                             >  2:72466/1‑104 (MQ=255)                                                                                                                                                                  catgcatTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCg                                                                                                                                                                                                                                             <  1:72466/104‑1 (MQ=255)                                                                                                                                                                     gcatTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcacggttctttgctgccgttaacccgtct                                                                                       <  2:20882‑M2/251‑166 (MQ=255)                                                                                                                                                                           agtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGccc                                                                                 >  1:511986‑M1/76‑251 (MQ=255)                                                                                                                                                                                   ggATTTATCCACGCCGCTTACGCAATCAAATGATTCTGATGGCAATCCTGATTGTGATTGTCCCAACGCTTACTATTGGTAATATCGTAGAAACATAAGGACGTTCATCAGTCTTAGCTGAAAAAGAGAAAAAACTTACTGCCGTTGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCCGAACTTGCCCCCATTAc                                                                          <  2:160570/250‑1 (MQ=255)                                                                                                                                                                                    actagtattaatactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTACCATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGGCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCACGCACTAGTCGATCGCTATGATCTCTACAGCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCcccatttccg                                                                        >  2:485538‑M1/67‑247 (MQ=255)                                                                                                                                                                                    actagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCg                                                                        >  2:496353‑M1/67‑251 (MQ=255)                                                                                                                                                                                       ttATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATGGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattgcaatcccgctgccgcagatattcccgttgcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaagtttctttgctgccgttaacccatctggtttgcgaatgatact                                                                      >  2:391308‑M2/1‑68 (MQ=255)                                                                                                                                                                                               gccgcTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtc                                                             <  2:215312‑M2/251‑192 (MQ=255)                                                                                                                                                                                                  gcTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacg                                                          >  1:227817‑M2/1‑57 (MQ=255)                                                                                                                                                                                                          aaTCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTccc                                                  >  1:482311/1‑251 (MQ=255)                                                                                                                                                                                                             taagtaatattggatctctggagattcagggggccagtctaGCTTACTATTGGTTATATCGGAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCAGAGGTCAAACTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTAAAACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCAATTACCGACACTATAACTCACGCCTTCCCTgg                                               <  2:205330‑M1/210‑1 (MQ=255)                                                                                                                                                                                                             cAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTg                                                <  1:484566/250‑1 (MQ=255)                                                                                                                                                                                                              aaaTGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGc                                              >  2:378035/1‑251 (MQ=255)                                                                                                                                                                                                                    tattggttgtctggagattcagggggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGt                                        <  1:25281‑M1/217‑1 (MQ=255)                                                                                                                                                                                                                     ccTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgctaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacga                                         <  2:454574‑M2/249‑212 (MQ=255)                                                                                                                                                                                                                      cTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttacagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggctctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagc                                      <  2:497819‑M2/251‑215 (MQ=255)                                                                                                                                                                                                                           ggCAATCCTGATGGTCATTGTCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctct                                 <  1:517487‑M2/251‑220 (MQ=255)                                                                                                                                                                                                                                        agggggccagtctaGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGTGCTGGTTATTACAACAAAAt                    <  1:317142‑M1/237‑1 (MQ=255)                                                                                                                                                                                                                                        agggggccagtctaGATTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCCGGCACTACGCGATCGCTATGATCTCTACATCGCCTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGTGCTGGTTATTACAACAAAAt                    <  1:438468‑M1/237‑1 (MQ=255)                                                                                                                                                                                                                                          catagtcacAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCAGCCGTGGTCACCCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGGCTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTGCCGAAAATATCACTCACGCCTTCCCTAGCATCGGTGCTGGTTATTACAACAAAAtt                   <  2:167585/242‑2 (MQ=255)                                                                                                                                                                                                                                               tCCCAACGCTTAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccgg             <  1:522408‑M2/251‑240 (MQ=255)                                                                                                                                                                                                                                                cccAACGCTTAtggatttgcctctatatttccagacatctgttatcacttaacccattacaatcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctgttttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccgg             >  1:80005‑M2/1‑11 (MQ=255)                                                                                                                                                                                                                                                   aaCGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGTGCTGGTTATTACAACAAAATGCTGGATGCg          >  1:195859/1‑250 (MQ=255)                                                                                                                                                                                                                                                         tAtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggactccgcacc   <  1:323178‑M2/251‑250 (MQ=255)                                                                                                                                                                                                                                                          aCTATTGGTTATATCGTAGAAACGGAATGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGTGCTGGTTATTACAACAAAATGCTGGATGCGATAATCAc  <  1:370728/251‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                           GCGAAGCTCCGCCTCAGGTGACCGATGGAGTGTGGTTAAGGTAGCGGTAAAAGCGTGTTACCGCAATGTTCTCTCTTCTCTGGAATATGATACACCGCCGAGAAATCATCACCTTAACCTCTGATAATCGTCATATACCGGACAAGACTAGTGGATTTCAGCATGCATTATATGAAGTGGATTTATCCACGCCGCTTACGCAATCAAATGATCCTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAACTTTCTGCCGTGGTCAACCTGCTTAATCAGGCACTAGGCGATCGCTATGATCTCTACATCGACTTACCACGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGTGCTGGTTATTACAACAAAATGCTGGATGCGATAATCAC  >  NC_000913/2319881‑2320380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.