New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1907165 =	28 (0.590)	19 (0.400)	18/488	1.4	40.4%	intergenic (‑105/+61)	rlmA/cspC	23S rRNA m(1)G745 methyltransferase/transcription antiterminator and regulator of mRNA stability CspC
	?	NC_000913	3720633 =	NA (NA)					noncoding (1/1443 nt)	IS150	repeat region

ATTTGGGTGCAATGAGAATGCGCAACGCCGTAAGTAAGGCGGGAATAATTTCCCGCCGAAGACTCTTACTCTTTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGCGTTAGTGCTGATCCAGAGTTGC  >  NC_000913/3720383‑3720881                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                         aTTTGGGTGCAATGAGAATGCGCAACGCCTTAAGTAAGGCGGGAATAATTTCCCGCCGAAGACTCTTACTCTTTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                                                                                                                                                                                                                          <  2:125893/251‑1 (MQ=255)     cgtccaggtttactcctgatagaaagtcatcggcacttgacggtaattacttatgaccaaaaacctctttgcgtcacatttttacaacaattattgcatagaaaaataatgctattggaatgaagatagtaacgaatggctaatctggctaacccgaatgacgaaaaattctggaaaacagcacgccatttcgtgaagtgattattttcgtccctaaggaatcctcataggatgcctgcgggtgccTGTAc                                                                                                                                                                                                                                                      <  2:140800‑M2/5‑1 (MQ=255)       gTGCAATGAGCATGCGAAACGCCGTACGTAAGGCGGGAACAATTTCCCGCCGAAGACTCTTACTCTTTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTTCTGTTTAATCTGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAACCAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTg                                                                                                                                                                                                                                                    <  1:119871/251‑1 (MQ=255)             ggctggatcctgcgccgtcgtcgccatcatccgcaccattttggttacagcctgctggcgctcttactggcgctgggttcggtggacgccagcccggcatttcgtcagataacggaactggtgaaatcccagtcacgcgacggcgacccggactttgcggcttattataaagagccgtcgaaaactatccctgacccgaaactcaacctggtttatatctacggcgaaagtctcgagcTGTACTGCAccc                                                                                                                                                                                                                                               <  1:467166‑M1/12‑1 (MQ=255)                     cctgcgccgtcgtcgccatcctccgcaccattttggttacagcctgctggcgctcttactggcgctgggttcggtggacgccagcccggcatttcgtcagataacggaactggtgaaatcccagtcacgcgacggcgacccggactttgcggcttattataaagagccgtcgaaaactatccctgacccgaaactcaacctggtttatatctacggcgaaagtctcgagcTGTACTGCACCCATTttgttg                                                                                                                                                                                                                                      >  1:3259‑M1/231‑251 (MQ=255)                                         ggaaataatTTCCCGCCGAAGACTCTTACTCTTTCAATTTGCAGGCTAAAAACGACTCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTCCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcc                                                                                                                                                                                                                  <  1:382757/248‑1 (MQ=255)                                            aataatTTCCCGCCGAAGACTCTTACTCTTTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt                                                                                                                                                                                                               <  2:120681/251‑1 (MQ=255)                                             cggtaattacttatgaccaaaaacctctttgcgtcacatttttacaacaattattgcatagaaaattaatgctattggaatgaagagagtaacgaatggctaaactggctaacccgaatgacgaaaaattctggaaaacagcacgcaatttcgtgaagtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt                                                                                                                                                                                                               >  2:320275‑M2/207‑250 (MQ=255)                                              gctgatggcagcaaagatgtgttcgtacacttctccgctatccagggtaatggcttcaaaactctggctgaaggtcagaacgttgagttcgaaattcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa                                                                                                                                                                                                              >  2:171861‑M2/206‑250 (MQ=255)                                                        tatgaccaaaaacctctttgcgtcacatttttacaacaattattgcatagaaaattaatgctattggaatgaagagagtaacgaatggctaaactggctaacccgaatgacgaaaaattctggaaaacagcacgcaatttcgtgaagtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaa                                                                                                                                                                                                     >  1:87758‑M2/196‑249 (MQ=255)                                                        acanagatgtgttcgtacacttctccgctatccagggtaatggcttcaaaactctggctgaaggtcagaacgttgagttcgaaattcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTTGTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAg                                                                                                                                                                                                   <  2:476914‑M2/56‑1 (MQ=255)                                                             agcctgctggcgctcttactggcgctgggttcggtggacgccagcccggcatttcgtcagctaacggaactggtgaaatcccagtcacgcgacggcgacccggactttgcggcttattataaagagccgtcgaaaactatccctgacccgaaactcaacctggtttatatctaaggcgaaagtctcgagcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaa                                                                                                                                                                                               <  1:486214‑M1/60‑1 (MQ=255)                                                              caaaaacctcgttgcgtcacatttttacaacaattattgcatagaaaattaatgctattggaatgaagagagtaacgaatggctaaactggctaacccgaatgacgaaaaattctggaaaacagcacgcaatttcgtgaagtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa                                                                                                                                                                                             <  2:379825‑M2/62‑1 (MQ=255)                                                              atgtgttcgtacacttctccgctatccagggtaatggcttcaaaactctggctgaaggtcagaacgttgagttcgaaattcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAACGCCaaa                                                                                                                                                                                              >  2:290658‑M2/190‑250 (MQ=255)                                                                tcttactcttTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAt                                                                                                                                                                                            >  1:20817/1‑250 (MQ=255)                                                                    actcttTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGACAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt                                                                                                                                                                                       >  2:406640/1‑251 (MQ=255)                                                                     cgtacacttctccgctatccagggtaatggcttcaaaactctggctgaaggtcagaacgttgagttcgaaattcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt                                                                                                                                                                                       <  2:420906‑M2/68‑1 (MQ=255)                                                                       ctttgcgtcacatttttacaacaattattgcatagaaaattaatgctattggaatgaagagagtaacgaatggctaaactggctaacccgaatgacgaaaaattctggaaaacagcacgcaatttcgtgaagtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt                                                                                                                                                                                      <  1:372508‑M2/69‑1 (MQ=255)                                                                            aaTTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaa                                                                                                                                                                                >  2:6970/1‑250 (MQ=255)                                                                             aTTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaa                                                                                                                                                                                >  1:508330/1‑249 (MQ=255)                                                                                 gCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGGAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgcgc                                                                                                                                                                           <  1:31153/250‑1 (MQ=255)                                                                                   atgCTAAAAACGACGCCAGCTCATAACTCTCCTTTTTAATATGCAATTCACACAGTTAATCTCTTATCATCCAGGTGAAAAATAAAAGCTTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTGGATTTCCAACGGGTATGTACTGCACCCATTTTGTTGGACGATGAAATGTAATAGTCTCTAATATGTCAAATCCAAAATACCCTTTTGAAAAGCGCCtt                                                                                                                                                                        <  2:321044/249‑1 (MQ=255)                                                                                   aGGNTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTTAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCtt                                                                                                                                                                        <  2:467649/251‑1 (MQ=255)                                                                                   aGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCtt                                                                                                                                                                        <  1:95095/251‑1 (MQ=255)                                                                                    gctgggttcggtggacgccagcccggcatttcgtcagataacggaactggtgaaatcccagtcacgcgacggcgacccggactttgcggcttattataaagagccgtcgaaaactatccctgacccgaaactcaacctggtttatatctacggcgaaagtctcgagcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTg                                                                                                                                                                       <  2:181127‑M1/84‑1 (MQ=255)                                                                                        cagggtaatggcttcaaaactctggctgaaggtcagaacgttgagttcgaaattcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGt                                                                                                                                                                   >  2:152300‑M2/164‑251 (MQ=255)                                                                                         aaaaCGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCACAATACCCTTTTGAAAAGCGCCTTGAAGTc                                                                                                                                                                  >  2:386272/1‑251 (MQ=255)                                                                                              attattgcatagaaaattaatgctattggaatgaagagagtaacgaatggctaaactggctaacccgaatgacgaaaaattctggaaaacagcacgcaatttcgtgaagtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGa                                                                                                                                                              >  2:108879‑M2/158‑250 (MQ=255)                                                                                                      caaaactctggctgaaggtcagaacgttgagttcgaaattcaggacggccagaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCactact                                                                                                                                                     >  2:442847‑M2/150‑251 (MQ=255)                                                                                                        cATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTTCTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTc                                                                                                                                                   >  1:438632/1‑251 (MQ=255)                                                                                                          actctggctgaaggtcagaacgttgagttcgaaattcaggacggccagaaaggtccggccgctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAACGCCAAAATACCCTTTTGAAAAGCGCCTTGACGTCGTGAATCACTACTTcac                                                                                                                                                 >  2:283872‑M2/146‑251 (MQ=255)                                                                                                               taatgctattggaatgaagagagtaacgaatggctaaactggctaacccgaatgacgaaaaattctggaaaacagcacgcaatttcgtgaagtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACt                                                                                                                                             <  2:423387‑M2/110‑1 (MQ=255)                                                                                                                             gCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAgg                                                                                                                              >  1:287316/1‑251 (MQ=255)                                                                                                                             gCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAg                                                                                                                               <  1:394183/250‑1 (MQ=255)                                                                                                                                aTTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATCCCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGatc                                                                                                                           <  1:247195/251‑1 (MQ=255)                                                                                                                                      acaGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCg                                                                                                                     >  2:39095/1‑251 (MQ=255)                                                                                                                                        acgaatggctaaactggctaacccgaatgacgaaaaattctggaaaacagcacgcaatttcgtgaagtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGc                                                                                                                   <  1:108879‑M2/136‑1 (MQ=255)                                                                                                                                          atcccagtcacgcgacggcgacccggactttgcggcttattataaagagccgtcgaaaactatccctgacccgaaactcaacctggtttatatctacggcgaaagtctcgagcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCTCAACTGATGATGGTTACAGGATCATCTCGGCAc                                                                                                                 >  1:181127‑M1/114‑251 (MQ=255)                                                                                                                                                    actggctaacccgaatgacgaaaaattctggaaaacagcacgcaatttcgtgaagtgattattttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGgtgt                                                                                                       <  1:34757‑M2/148‑1 (MQ=255)                                                                                                                                                        agaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTgtccac                                                                                                   >  1:373601‑M2/100‑249 (MQ=255)                                                                                                                                                         gaaaggtccggcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCACCTAATATGTCAAAGCCAAAATCCCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTccccc                                                                                                  <  2:373601‑M2/153‑1 (MQ=255)                                                                                                                                                          cAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCg                                                                                                 >  1:204931/1‑251 (MQ=255)                                                                                                                                                                  ggcagctgttaacgtaacagatatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtctaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCTGCACGTTTTGGTGTCCCCCgaaccccgg                                                                                         >  1:183361‑M2/90‑248 (MQ=255)                                                                                                                                                                  ggactttgcggcttattataaagagccgtcgaaaactatccctgacccgaaactcaacctggtttatatctacggcgaaagtctcgagcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAgg                                                                                         <  1:124426‑M1/162‑1 (MQ=255)                                                                                                                                                                   gcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGt                                                                                        <  2:366218‑M2/163‑1 (MQ=255)                                                                                                                                                                   gcagctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGt                                                                                        <  2:326168‑M2/163‑1 (MQ=255)                                                                                                                                                                     agctgttaacgtaacagctatctgatcgaatccactgatctgaagtgtgcatacgcttccatctcgctataaagcctagtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGCCACCCGAACCCAGGTc                                                                                       >  2:288401‑M2/87‑250 (MQ=255)                                                                                                                                                                          gCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGAc                                                                                  >  2:49164/1‑250 (MQ=255)                                                                                                                                                                           cGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACAt                                                                                <  1:448917/251‑1 (MQ=255)                                                                                                                                                                            gTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTACCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCACCGAACCCAGATCAGGACATg                                                                               >  2:237225/1‑251 (MQ=255)                                                                                                                                                                                    agctatctgatcgaatccactgatctgaagtgtgaatacgcttcaatctcgctataaagcctcgtctaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGGGAATCACTACGTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGccc                                                                       <  2:183361‑M2/180‑1 (MQ=255)                                                                                                                                                                                     aTCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCct                                                                      >  2:31217/1‑251 (MQ=255)                                                                                                                                                                                           aTTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGa                                                                <  2:194419/251‑1 (MQ=255)                                                                                                                                                                                            gatcgaatccactgagctgaagtgtgaatacgcttcaatctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAGCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTAt                                                                  <  2:254052‑M2/185‑1 (MQ=255)                                                                                                                                                                                                                  tttcgtccctaaggaaacctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTa                                          >  1:15415‑M2/42‑250 (MQ=255)                                                                                                                                                                                                                        caacctggtttatatcgacggcgaaagtctcgagcTGTACTGCTCCCACTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTGGTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGTTCAGGACATGGGTTGTCCTCTATGAAAATCATGGAGAAAAAGGTTGAATTcc                                     >  2:486214‑M1/36‑249 (MQ=255)                                                                                                                                                                                                                            cccAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCTCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAAc                                <  1:6970/250‑1 (MQ=255)                                                                                                                                                                                                                                gCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGACTAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAAGATCATCTCGGAACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCNaa                            >  2:481249/1‑250 (MQ=255)                                                                                                                                                                                                                                   ctcgctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCTCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAGTCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGc                        >  1:390925‑M2/25‑251 (MQ=255)                                                                                                                                                                                                                                   cctcataggatgcctgcgggtgccTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGc                        <  1:320275‑M2/227‑1 (MQ=255)                                                                                                                                                                                                                                    cctGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAgg                         <  2:287316/249‑1 (MQ=255)                                                                                                                                                                                                                                       ctataaagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAACGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGCGtt                     >  2:294503‑M2/21‑250 (MQ=255)                                                                                                                                                                                                                                         gtTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACGTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAAGTCCCAAACCTAAAGGCGTTAGt                  <  2:393535/251‑1 (MQ=255)                                                                                                                                                                                                                                            aagcctcgtcgaatgTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGCGTTAGTGCt               <  1:442847‑M2/236‑1 (MQ=255)                                                                                                                                                                                                                                                      gAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGCGTTAGTGCTGATCCAGAGt     >  1:262446/1‑251 (MQ=255)                                                                                                                                                                                                                                                      cgngcTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGCGTTAGTGCTGATCCagag      <  2:467166‑M2/245‑1 (MQ=255)                                                                                                                                                                                                                                                          gTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGCGTTAGTGCTGATCCAGAGTTGc  <  1:290658‑M2/249‑1 (MQ=255)                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                         ATTTGGGTGCAATGAGAATGCGCAACGCCGTAAGTAAGGCGGGAATAATTTCCCGCCGAAGACTCTTACTCTTTCAATTTGCAGGCTAAAAACGCCGCCAGCTCATAACTCTCCTGTTTAATATGCAATTCACACAGTGAATCTCTTATCATCCAGGTGAAAAATAAAAGCGTGAAACAAATCACTATTAAAGAAAGTAATCTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGTGTCCCCCGAACCCAGGTCAGGACATGGGTTGCCCTCTATGAAAAACATGGAGAAAAAGGTTTAATTCCCAAACCTAAAGGCGTTAGTGCTGATCCAGAGTTGC  >  NC_000913/3720383‑3720881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.