| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 258,999 | Δ14,956 bp | IS5‑mediated | [crl]–[ykfC] | 21 genes [crl], phoE, proB, proA, thrW, ykfI, yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI1, insN, eyeA, [ykfC] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 258999 | 274956–273955 | 14957–15958 | 28 [2] | [5] 7 | [crl]–[insH1] | [crl],phoE,proB,proA,thrW,ykfI,yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI1,insN,eyeA,ykfC,[insH1] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 258998 | 2 (0.040) | 26 (0.540) | 23/488 | 1.0 | 92.9% | pseudogene (323/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl |
| ? | NC_000913 | 273955 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
GATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAACGCTGACATATTTTTGTTGAAATAATACGTAGCACCGACGTCGATATAATTGACCAGATCTTCATCACCGATACCTTCAATATCTTTCCCTTTCGATAA > NC_000913/258775‑259239 | gatggaGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattc < 2:177793‑M1/251‑28 (MQ=255) gaGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttct < 1:512514‑M1/251‑32 (MQ=255) cTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACAAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcgg > 1:192925‑M1/1‑217 (MQ=255) ttACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct > 1:203114‑M1/1‑195 (MQ=255) ttACCTACAGTTACCAGTTTGGCCTGTTCAATAAAGCAGGCGACTGGAAGAGTGTTCCGTTAAAAGACATTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTTCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTTGTGATGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttc < 2:1189‑M1/250‑56 (MQ=255) aCAGTTACAAGTTTGGTCTGTTCGATAAAGCAGGCGAGTGGAAGAGTTTTCCGGTAAAAGCCACTGAAGTGGTTGAACGACTGGAGCACCCCCTGCGTGATTTTCACGAGAAGCGGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcacttcatttcttcatg < 2:50200‑M1/250‑62 (MQ=255) ccgttACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGACGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgagaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt > 2:510439‑M1/3‑188 (MQ=255) cAGTTACCATTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt < 1:459534‑M1/251‑64 (MQ=255) aGGCGACTGGAAGAGTGTTCCGGTAAAAGACTCTGAAGTGGTTGAACGGCTGGAGGACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGGTGACGACGCTGAATCTGAAGCTGGAACCGGCGGTTTATTTTCGTTACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaatgcttctcggctgactcagtcatttcatttcttcatgt < 2:246685‑M1/220‑63 (MQ=255) aGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGCAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGCACTGCTGACGACGCTGAATCTGAAGCTGGAATCGGCGGAAGATTTTCGTGCCGAGCCGGTGAAGTTAAggcaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt > 1:246685‑M1/1‑158 (MQ=255) ggAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGTAGTTAAggaaggtgcgaataagcggtgaaattcttcccggctggatcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaaagccctgaatcagc > 2:363460‑M1/1‑150 (MQ=255) gtgtTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctattt > 2:196895‑M1/1‑144 (MQ=255) aaGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattt > 2:225422‑M1/1‑123 (MQ=255) ggagccccccgtgcgtgaggttcACGAGAAGCTGCGTGAACTGCTGACGACGCTTAATCTGAAGCTGGAACCGGCGGATGATTTTCGGGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcgtggaaattcttctcgtctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctagttagaccgtttcttcgccatttaaggctttatccccagt < 2:63044‑M1/240‑145 (MQ=255) cccTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatt < 1:392474‑M1/205‑107 (MQ=255) cccTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatt > 2:392474‑M1/1‑99 (MQ=255) gTTTCACGAGAAGCTGCCTGAACTGCTGCCGCCGCTAAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGACCCGGGGATGATTAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcc > 1:155992‑M1/1‑89 (MQ=255) tgcacGAGAAGCGGCGGGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccattgaaggcgttatccccagtttttagtgagatttctccc < 1:196895‑M1/248‑164 (MQ=255) agaAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacg > 1:146732‑M1/1‑81 (MQ=255) aGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAgtt < 1:400743/198‑1 (MQ=255) aGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAgtt > 2:400743/1‑198 (MQ=255) cgacgCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaa > 2:204283‑M1/1‑60 (MQ=255) gAATCGGAAGCGGGAACCGGCGGTTGATTTTCTGGACGAGCCGGTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttg < 2:133054‑M1/251‑199 (MQ=255) cTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGGAGTTAAggaaggtgcgaatcagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagacgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtg > 2:233895‑M1/1‑43 (MQ=255) cgtaacgagCCGGTTAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttat < 2:192925‑M1/247‑230 (MQ=255) aGCCGGTGAAGTTAAggaaggtgcgaataatcggggaaatgcttcttggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccggaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccatgttttagtgagatctctcccactgacgtagcatttgttccgcccgaaacaggttggccagcgtgaataacatcgccatttggttatcgttgtt < 2:419745‑M1/251‑237 (MQ=255) ggTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgtttttcagc > 2:146997‑M1/1‑11 (MQ=255) gTGAAGTTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatggcttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccattttttagtgagagctctcccactgacgtatcatttggttcgcccgaaacaggttggccagcgtgaataacatcgccagttagttagcgtttttcagct < 2:155992‑M1/251‑242 (MQ=255) | GATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGTTCGATAAAGCAGGCGACTGGAAGAGTGTTCCGGTAAAAGACACTGAAGTGGTTGAACGACTGGAGCACACCCTGCGTGAGTTTCACGAGAAGCTGCGTGAACTGCTGACGACGCTGAATCTGAAGCTGGAACCGGCGGATGATTTTCGTGACGAGCCGGTGAAGTTAACGGCGTGAGTGAAATGTGCCGGATGCATCACATCCGGCAATATTCATTAAAACTGATACGTCATGCCAACCGCGACAATATCATCATTATTAATATTCAATTTGTTATCGCTATCCAGTTGGTTGATTTTATAATCAACAAACGCTGACATATTTTTGTTGAAATAATACGTAGCACCGACGTCGATATAATTGACCAGATCTTCATCACCGATACCTTCAATATCTTTCCCTTTCGATAA > NC_000913/258775‑259239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |