New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1307459 =	45 (0.950)	7 (0.150)	7/486	2.9	13.5%	coding (1187/1461 nt)	clsA	cardiolipin synthase A
	?	NC_000913	1467910 =	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region
Rejected: Frequency below/above cutoff threshold.

TCATTCACCAGGCATTATTGACTGCGGCTTATTCGGCGCGTGAATATTTGATCATGACCACGCCCTACTTTGTGCCAAGCGATGATTTACTTCATGCGATTTGCACGGCGGCGCAGCGCGGGGTGGATGTCAGTATTATCCTTCCGCGAAAAAATGACTCGATGCTGGTCGGCTGGGCCAGTCGCGCATTCTTTACGGAACTGCTGGCTGCTGGGGTTAAAATTTAt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1307684‑1307459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCT  >  NC_000913/1467910‑1468131                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCATTCCCCAGGCATTATTGACTGCGCATTATTCGGCGAGTGCATATTTGATCATGACCACGCCCTACTTTGTGCCAAGCGATGATTTACTTCATGCGATTTGCACGGCGGCGCAGCGCGGGGTGGATGTCAGTATTATCCTTCCGCGAAAAAATGACTCGATGCTGGTCGGCTGGGCCAGTCGCGCATTCTTTACGGAACTGCTGGCTGCTGGGGTTAAACTTTATGGATTTGCCCCTATATTTCCAGAC                                                                                                                                                                                                       >  1:137414/1‑251                                        GTGAATATTTGATCATGACCACGCCCTACTTTGTGCCAAGCGATGATTTACTTCATGCGATTTGCACGGCGGCGCAGCGCGGGGTGGATGTCAGTATTATCCTTCCGCGAAAAAATGACTCGATGCTGGTCGGCTGGGCCAGTCGCGCATTCTTTACGGAACTGCTGGCTGCTGGGGTTAAAATTTATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGC                                                                                                                                                                 >  1:424290/1‑250                                                                   ACTTTGTGCCAAGTGATGATTTACTTCATGCGATTTGCACGGCGGCGCAGCGCGGGGTGGATGTCAGTATTATCCTTCCGCGAAAAAATGACTCGATGCTGGTCGGCTGGGCCAGTCGCGCATTCTTTACGGAACTGCTGGCTGCTGGGGTTAAAATTTATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCC                                                                                                                                      <  2:137414/250‑1                                                                              AGCGATGATTTACTTCATGCGATTTGCACGGCGGCGCAGCGCGGGGTGGATGTCAGTATTATCCTTCCGCGAAAAAATGACTCGATGCTGGTCGGCTGGGCCAGTCGCGCATTCTTTACGGAACTGCTGGCTGCTGGGGTTAAAATTTATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGC                                                                                                                          <  2:258967/251‑1                                                                                                                                                                                     GTCGCGCATTCTTTACGGAACTGCTGGCTGCTGGGGTTAAAATTTATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTT                   >  1:206153/1‑251                                                                                                                                                                                                   ACGGAACTGCTGGCTGCTGGGGTTAAAATTTATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCT     <  2:520718/251‑1                                                                                                                                                                                                      GAACTGCTGGCTGCTGGGGTTAAAATTTATGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCT  >  1:193143/1‑251                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TCATTCACCAGGCATTATTGACTGCGGCTTATTCGGCGCGTGAATATTTGATCATGACCACGCCCTACTTTGTGCCAAGCGATGATTTACTTCATGCGATTTGCACGGCGGCGCAGCGCGGGGTGGATGTCAGTATTATCCTTCCGCGAAAAAATGACTCGATGCTGGTCGGCTGGGCCAGTCGCGCATTCTTTACGGAACTGCTGGCTGCTGGGGTTAAAATTTAt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1307684‑1307459 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCT  >  NC_000913/1467910‑1468131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.