| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 780,624 | 0 | C | T | 79.2% | 95.7 / 24.3 | 53 | noncoding (71/76 nt) | lysT | tRNA‑Lys |
| Reads supporting (aligned to +/- strand): ref base C (7/4); new base T (22/20); total (29/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.67e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCTCAGTTGGTAGAGCAGT > NC_000913/780380‑780870 | cgcgATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACtcacca > 1:227176/1‑250 (MQ=255) aTGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAgg > 1:69031/1‑251 (MQ=255) attattTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAgg > 1:143421/1‑250 (MQ=255) tattTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGAt < 1:127367/250‑1 (MQ=255) gtgCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAAc < 1:172645/251‑1 (MQ=255) tgCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGACGGATAACGTTGCATGAGCAACg > 1:414154/1‑251 (MQ=255) aaTCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGGAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTACGGCGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGccc > 1:95952/1‑251 (MQ=255) aTCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCg > 1:72835/1‑251 (MQ=255) gCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCg < 1:427503/251‑1 (MQ=255) aGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCgag < 2:346201/251‑1 (MQ=255) tGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGAc < 1:440373/250‑1 (MQ=255) gTGATCTACATCGAAATTTTTGTTGCGCTAAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAg < 2:11815/251‑1 (MQ=255) aCATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAA‑CGTGAAGGATAACGGTGGATGAGCAACGGCCCGGAAGGG‑GAGACGAAATCGAGTc > 2:253829/1‑250 (MQ=38) ttttGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CAc < 1:204846/250‑1 (MQ=255) ttttGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACg > 2:241919/1‑251 (MQ=255) tttGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACg > 2:238539/1‑250 (MQ=255) gTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGAGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACAt > 1:24708/1‑251 (MQ=255) tGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGACCG‑AAGGGCGAGACGAAGTCGAGTCATCATG‑CACGAACAACCACTAGCAtagt > 1:457591/1‑251 (MQ=255) gAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACAtag < 1:238539/249‑1 (MQ=255) aaaTCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGTGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCTCAGGTTCGAATCCTGCACGACTCACCAATCGCTAATGTGGAAG‑CGGTAGTAAAACGTGAAGGATATCGTTGCATGAGCAACTGCCCG‑AAGGGTGAGACGAAGTCGTGTCATCCTG‑CACGACCCACCACTAACAtagtta < 1:194447/251‑1 (MQ=37) tAATATATGCCGCCGTTGCCACGGGATATCACACAAACCGAAAGCAACGACAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAAGCGGAAG‑CGGTAGTAAAACGTGACGGATAACGTTGCATGAGCACCGGCCAG‑AAGGGCGAGACGAGGGCGATTCATC‑TGACACGACTCACGACTaaaagattaggtaga > 1:76181/1‑236 (MQ=25) gccgccGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCTCCACTAACATAGTTAGTTGTAGTATCCAGc < 1:142405/251‑1 (MQ=255) gCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCg > 1:398274/1‑251 (MQ=255) gATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGAtt > 1:104257/1‑251 (MQ=255) aaaaaaacCGAAAGCAACGAAAAAGGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCATCGTAGTATCGGGTGATTAGCTCa < 2:64760/247‑1 (MQ=255) aacaaacCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAg < 1:54023/251‑1 (MQ=255) cctaaaGCAACGAAAAAGTGGTTCTTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGTTGATTAGCTCAGCTGGga < 1:391989/248‑1 (MQ=255) gCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAg < 1:277530/215‑1 (MQ=255) gCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAg > 2:277530/1‑215 (MQ=255) aCGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTc < 2:69031/251‑1 (MQ=255) gAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTccc < 1:204629/251‑1 (MQ=255) aaaaaGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATTTCTAAGTCGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCGTGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCGTCGTG‑CACGAGCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGAATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCt > 2:152876/1‑251 (MQ=21) aaaGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTTAAG‑TCGAAGACGGTAGTTAAGCGTGAAGGATAACGTTGCATGAGCAACAGCTCG‑AAGGGCGAGAGTGAGGGGAGACATCCTG‑CACGACGGAGCACTAACATTGATAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCtt > 2:88582/1‑250 (MQ=18) cAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACACACCACTAACATAGGTAGTTGTAGTATGCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGATAGCACCTCCCGTACAAGGAAGGGGtagg > 2:378004/1‑246 (MQ=25) ttGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGAAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGAGGAAAGCGAGTCATCGCG‑CAAGACACACCCCTAACATAGTTAGTTGGAGAATCAAGCGTAGTATCGGGGGACTCGCTCAGCTGGAAGAGAACCTCACTTACAAGGAGGGGGTCGGCGGTTCGAGCCAGtca > 2:108478/1‑250 (MQ=25) tAATCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCAATCCCGACATcaccnccc > 2:452896/1‑247 (MQ=255) aacAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTGCGATCCCGTCATCACCcaccac < 2:468408/249‑1 (MQ=255) aTCAATTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATACCGTCATCACCcaccac > 2:267896/1‑251 (MQ=255) aTCAATTGGACGCAGGTTGGAATCCAGCACCGCTCACCATGAGCTAAGGTGGAAG‑CGGTAGTAAAACGGGAAGGATAGCGTTGCGTGAGCAACGGCCCG‑AAGGGCGGGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGGAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCGCCcaccac < 2:340519/251‑1 (MQ=25) aaTTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCgg < 1:267896/251‑1 (MQ=255) aTTGGTCGCAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGAGATTAGCTCAGCTGGGTGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGGTAGATTCCGCCAGcacccacccancgg > 2:449868/1‑245 (MQ=37) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCCTTCCCCACCAACggggc > 2:242233/1‑249 (MQ=255) cAGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGc < 1:241919/251‑1 (MQ=255) aGGTTCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCt > 1:450616/1‑251 (MQ=255) ttCGAATCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGGTGTTAGCTc > 1:63907/1‑249 (MQ=255) tCGAATCCTGCACGACTCACCAATCGCTCAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAAAGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTgtagta > 1:275789/1‑143 (MQ=255) tCGAAGCCTGCACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAGCGGCCCG‑AAGGGCGAGACGAAGGCGAGTCATCCTG‑CACGACCCACCTCTAACATAGTTAGTTgtagta < 2:275789/143‑1 (MQ=255) aaTCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCCGGTCGGTAGCTCAGTTgg > 1:293845/1‑251 (MQ=255) cTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGGTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCTCAGTTGGTagg > 1:127473/1‑250 (MQ=255) cACGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCTCAGTTGGTAGAGCa < 1:464766/251‑1 (MQ=255) aCGACTCACCAATCGCTAAGGTGGAAG‑CGTTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGAGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCTCAGTTGGTAGAGc > 1:261559/1‑249 (MQ=255) aCGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTATTATCGGGAGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTTGATCCCGTCATTAACCACCACCCGGCCGTTAGccccttttgtagggca > 1:117584/1‑235 (MQ=37) cGACTCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCTCAGTTGGTAGAGCAGt < 2:143421/251‑1 (MQ=255) cGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCAACCACCGGGTCGTTAGCTCAGTTGGTAGAGCAGt < 2:104257/251‑1 (MQ=255) | CGCGATGTAATGCATAACACACGACCAGAAGTCGCATTATTTCTGGTCGTGTCGTGCGAATCATAAGCAGTTGAGTGATCTACATCGAAATTTTTGTTGCGCTCAAGTCTGAAATCAGTAATATATGCCGCCGTTGCCACGGGATATCAAACAAACCGAAAGCAACGAAAAAGTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCGCTAAGGTGGAAG‑CGGTAGTAAAACGTGAAGGATAACGTTGCATGAGCAACGGCCCG‑AAGGGCGAGACGAAGTCGAGTCATCCTG‑CACGACCCACCACTAACATAGTTAGTTGTAGTATCCAGCGTAGTATCGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCGGGTCGTTAGCTCAGTTGGTAGAGCAGT > NC_000913/780380‑780870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |