New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	14 (0.310) +TTAAGTAATTGAGTG	14/454	1.6	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	2996360 =	NA (NA)					intergenic (+2504/+12)	ygeI/insD4	protein YgeI/IS2 insertion element protein InsB

TGCATTGCCAATGGTTGTTGCCTTATATAGGGTAACAACGTTGAAAAACCACATGTGATGATATTGTGATAGTTAGCGATGCCGGGTTTGTATCGTGCCTTTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACT  >  NC_000913/2996113‑2996602                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                     tgcATTGCCAATGGTTGTTGCCTTATATAGGGTAACAATGTTGAAAAAACACATGTGCGGATATTGTGATAGTTACAGATGCCGGGTTTGAATCGTGCCTTTTCATTTATTTCCAGAGGTATAGCTGATAAATCATCCCTTAGTACATAAGGAACCTTATAAAAAAACCCGAGTTCTGCAAACCTTTCTCGATAAAAGAGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTACACTTGTTTAtagg                                                                                                                                                                                                                                                   >  1:284764/1‑248 (MQ=255)                          tgtaGGGTAACAACGTTGAAAAACCACATGTGATGATATTGTGATAGTTAGCGATGCCGGGTTTGTATCGTGCCTTTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATc                                                                                                                                                                                                                         >  2:471977/3‑251 (MQ=255)                                gTAACAACGTTGAAAAACCACATGTGATGATATTGTGATAGTTAGCGATGCCGGGTTTGTATCGTGCCTTTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTAt                                                                                                                                                                                                                   <  1:358303/251‑1 (MQ=255)                                                aCCACATGTGATGATATTGTGATAGTTAGCGATGCCGGGTTTGTATCGTGCCTTTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTAc                                                                                                                                                                                                    >  1:28723/1‑250 (MQ=255)                                                                 tgtgATAGTTAGCGATGCCGGGTTTGTATCGTGCCTTTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTAt                                                                                                                                                                                                                   >  1:107533/1‑218 (MQ=255)                                                                 tgtgATAGTTAGCGATGCCGGGTTTGTATCGTGCCTTTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTAt                                                                                                                                                                                                                   <  2:107533/218‑1 (MQ=255)                                                                                                               ttCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCAtt                                                                                                                                     >  1:248637/1‑251 (MQ=255)                                                                                                                tCCAGCGGTATAGCTGGTAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACACGCCTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGAAAACAGCTCAATGGAAGTCAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCg                                                                                                                                   >  2:76788/1‑251 (MQ=255)                                                                                                                tCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTc                                                                                                                                    <  2:374244/250‑1 (MQ=255)                                                                                                                    gCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTtat                                                                                                                               <  1:371930/251‑1 (MQ=255)                                                                                                                                                                       aCCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGtt                                                                           <  2:372720/251‑1 (MQ=255)                                                                                                                                                                                            ctcGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGt                                                      >  2:48956/1‑251 (MQ=255)                                                                                                                                                                                              cGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTc                                                     >  1:345510/1‑250 (MQ=255)                                                                                                                                                                                                           aaCCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGttt                                       >  2:107988/1‑251 (MQ=255)                                                                                                                                                                                                            aCCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGatat                                                                                                                                                                                <  1:422882/114‑1 (MQ=255)                                                                                                                                                                                                            aCCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGatat                                                                                                                                                                                >  2:422882/1‑114 (MQ=255)                                                                                                                                                                                                              cACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTc                                     >  1:311356/1‑250 (MQ=255)                                                                                                                                                                                                                  gAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTGATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGACCTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCAGGATACTGATGTAGTCACGCTTTATCGTTTTCACGaa                                <  1:152939/251‑1 (MQ=255)                                                                                                                                                                                                                   aGTAAACAGATCAATGGAAGTACATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCCGACATCTGTTATCACTTAACCCATTACCAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGCACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑AGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGa                                 >  2:44328/1‑249 (MQ=255)                                                                                                                                                                                                                    gTAAACAGATGAATGGAAGTAAATTCCAATTGTTTATGGGATTT‑GCCCCTATAGTGCCCGCCAGCGGTTATCACTTAACACAATTCAAGCGCGCTGCCGCAGATATTCCCGTGTCGATCGATAACCCAGCGGACTATGCGGATGCCATTCGTTATGAGGGTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCTCG‑CTGTTTTGGTCATTATACTGATATAGTCACGCTGTATCGTTGTCACGaata                              <  2:277838/251‑3 (MQ=9)                                                                                                                                                                                                                          aGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTg                        >  2:338075/1‑251 (MQ=255)                                                                                                                                                                                                                            aTCAATGGAATTAAATTCCAATTGTTTATTTGATTT‑GCCCCTATATTTCCAGACATCTTTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGGGCGATAACCCAGCTCACTATGCCGATGCGATTCGTTATAATGCTCGATCGCCTCTGCAATCTTCTTTGCTGCCGTTAACC‑CGTCTCGTTTGTGCATGATACGTATGTAGTCACGCGTTATCCTTTTCCCGAATGTCTCTGCt                      <  2:284764/251‑1 (MQ=14)                                                                                                                                                                                                                               aaTGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCTCTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTGTCACGAAGCTCTCTGCTAtt                   <  2:35172/251‑1 (MQ=255)                                                                                                                                                                                                                               aaTGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTAtt                   <  1:323239/251‑1 (MQ=40)                                                                                                                                                                                                                                  ggAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCg                >  2:174933/1‑251 (MQ=39)                                                                                                                                                                                                                                         aaTTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTActct         >  1:383426/1‑251 (MQ=35)                                                                                                                                                                                                                                         aaTTCCAATTGGGTATTGGAGTT‑ACCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACAAAGCTCTCTGCTATTGCTTTActct         <  2:311030/251‑1 (MQ=11)                                                                                                                                                                                                                                          aTTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGCCATCTGTTATCACTTAACCCATTACAAGACCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGCCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACtctc        >  2:333035/1‑251 (MQ=25)                                                                                                                                                                                                                                                  tGTTTATTGGATTTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACt  <  2:248637/250‑1 (MQ=17)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                     TGCATTGCCAATGGTTGTTGCCTTATATAGGGTAACAACGTTGAAAAACCACATGTGATGATATTGTGATAGTTAGCGATGCCGGGTTTGTATCGTGCCTTTTCATTTATTTCCAGCGGTATAGCTGATAAATAATCCCTTAGTACATCAGGAACCTTATAAAAAAACCCGCGTTCTGCAAACCTTTCTCGATAAAAGTGACAACCACTGAGTAAACAGATCAATGGAAGTAAATTCCAATTGTTTATTGGATTT‑GCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACC‑CGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCTCTGCTATTCCGTTACTCTCCGGACT  >  NC_000913/2996113‑2996602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.