New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1411924	6 (0.130)	21 (0.490)	20/432	1.0	85.1%	coding (25/936 nt)	ttcA	tRNA cytosine(32) 2‑sulfurtransferase TtcA
	?	NC_000913	1434985 =	2 (0.050)					intergenic (‑579/+200)	ynaM/uspF	protein YnaM/universal stress protein F

GAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTG  >  NC_000913/1434752‑1435231                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       tccgggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGAtttt                                                                                                                                                                                                                                        <  2:319378‑M2/17‑1 (MQ=255)     ggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagatgcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGAc                                                                                                                                                                                                                                   <  2:346070‑M2/22‑1 (MQ=255)     ggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGAc                                                                                                                                                                                                                                   <  1:456678‑M2/22‑1 (MQ=255)                    tttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGAc                                                                                                                                                                                                                      <  1:238413‑M2/35‑1 (MQ=255)                    tttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACt                                                                                                                                                                                                                     <  2:335404‑M2/36‑1 (MQ=255)                     ttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTc                                                                                                                                                                                                                    <  2:417144‑M2/37‑1 (MQ=255)                         ttgattgaGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGATGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGAGGATTCTCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTc                                                                                                                                                                                                               >  1:279639/1‑251 (MQ=255)                                               aaaaattgattggcgcgctttgctgctaattgcgcagaatctccagcatggtatagctgtctttacccccggagatgcaaaccatgattcgatcgccttcttcaatcatattgaagtcagcaatggcttcgtccacgttacgatgcacacgtttttgtaatttgtgcaggttgtattgttctttcttCCTAATTTCTTGATTTTGCGACTTTTAAAAGCGACTCAATTCGTTATATCGCATCAGAAGAGTa                                                                                                                                                                                         <  2:281070‑M2/64‑1 (MQ=255)                                                      gattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagacagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATAAGAAGAGTATGCGTc                                                                                                                                                                                   <  2:184945‑M2/70‑1 (MQ=255)                                                          ggcgcgctttgctgcaaaatgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgtttcgacgcagacgtttttgtaatttgttcaggttgtatttttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCAGCAGAAGAGTATGCGTCATGcc                                                                                                                                                                              <  2:224906‑M2/75‑1 (MQ=255)                                                               gctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAAc                                                                                                                                                                         >  2:236509‑M2/172‑251 (MQ=255)                                                                    gctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGccc                                                                                                                                                                     >  1:388616‑M2/167‑250 (MQ=255)                                                                    gcngcaaattgcgcagaatctccagcatggtatagccgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGccc                                                                                                                                                                     <  2:446159‑M2/84‑1 (MQ=255)                                                                                        tccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGAtata                                                                                                                                                 >  1:29161‑M2/147‑250 (MQ=255)                                                                                         ccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGGTATaaa                                                                                                                                               <  2:300719‑M2/106‑1 (MQ=255)                                                                                                                cccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACgg                                                                                                                        <  1:363320‑M2/129‑1 (MQ=255)                                                                                                                  cccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGGGTGAGGTacggct                                                                                                                      >  2:31961‑M2/121‑249 (MQ=255)                                                                                                                    cggagaggcaaaccatgatgcgatcgccttcttcagtcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttggattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCATAAGAGTATGCGTCATGCAGGAACGCCCATCATAGGCAATCTGATATAAAAAACTGTGGCGTGTAGGgtccggcttt                                                                                                                    >  2:477945‑M2/119‑247 (MQ=255)                                                                                                                                         gatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGAATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTGTGGTCCGGATAAAAGGAGAAAATGATAGCACAt                                                                                               >  2:168803‑M2/98‑251 (MQ=255)                                                                                                                                                                  gtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCgc                                                                      <  1:470930‑M2/179‑1 (MQ=255)                                                                                                                                                                   tcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCgc                                                                      >  2:76487‑M2/72‑250 (MQ=255)                                                                                                                                                                                   aGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGTTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGtt                                                     <  2:97484/251‑1 (MQ=255)                                                                                                                                                                                                   atggttttgtaattagttcaggttgtattgttctttcttACTAATGTCTTGATTGTGCGACATTTAAAAGCGACGCAAGTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGTACAAc                                     <  2:406796‑M2/212‑1 (MQ=255)                                                                                                                                                                                                                               tGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCAGAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTc                                                                                                      <  1:336229/158‑1 (MQ=255)                                                                                                                                                                                                                                      tcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCa                                                                                <  1:299846/173‑1 (MQ=255)                                                                                                                                                                                                                                      tcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCa                                                                                >  2:299846/1‑173 (MQ=255)                                                                                                                                                                                                                                      tcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCt   <  1:210779/250‑1 (MQ=255)                                                                                                                                                                                                                                      tcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCt   <  2:127211/250‑1 (MQ=255)                                                                                                                                                                                                                                      tcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAAACAGCACGGAGCACTCTGCGTGACGCACTACAGCTg  >  1:90442/1‑251 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       GAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCTG  >  NC_000913/1434752‑1435231

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.