New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	19796 =	NA (NA)	27 (0.570)	25/482	0.8	75.0%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 361656	9 (0.190)					coding (205/612 nt)	lacA	galactoside O‑acetyltransferase

GACGCCTGGATTAATAACCACATGACTTCCGATCCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTCTACCCAGGCG‑TTTTCCCCTACCGTGGCAAACATTTCTTTAATCAGGCTTTCTCTTTTTTCAACTTCTGATGGATGCGAGTGATTAAACTCATACATTAACGTTTTCCCACGAAGTCTTTTTTCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTC  >  NC_000913/361411‑361902                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                        gttgCCTGGATTAATAACCACATGACTTCCGATCCAGACGTTATTGCCACTCGTTCTCGGAAAAGAGTAAATCTCGCCGATTTTTCTTACTAAATGCTGTACAGGGAGTCCCGTAACGGAAAGCGTACCGCTTCGTGCAATCAGTACCTTATCACCGATTGTTACCGTCTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAACTTGCTGCCTATATGGCTGTTGGAACCGTAAGAGAAATAGAc                                                                                                                                                                                                                                                      >  2:6906/4‑249 (MQ=255)        ggATTAATAACCACATGACTTCCGATCCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactcc                                                                                                                                                                                                                                             >  1:140003‑M2/1‑239 (MQ=255)         gATTAATAACCACATGACTTCCGATCCAGCCGTTATTGCCAATCGTTATCGGCAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTACCGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACACTGGTTACATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactcc                                                                                                                                                                                                                                             <  1:23080‑M2/250‑13 (MQ=255)                        gACTTCCGATCCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtg                                                                                                                                                                                                                              >  1:465675‑M2/1‑223 (MQ=255)                          cTTCCGATCCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCAGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGATCTGACCAGGCGATTTTccc                                                                                                                                                                                                                           >  1:43101/1‑251 (MQ=255)                              cGATCCAGACGTTAGTGCAAATCGTTATCGGAAAAGAATACATCTCGCCGTTTTTTCTAAATTCATGGTGTCCAGGGTGTCCCGTAACGGAAAGAGTAACGTTAGGGGCAATCAGTACGTTATCACCGATTGTTACCGTGAAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtactgactccaacttattgatagtgtttnttg                                                                                                                                                                                                                       <  2:445273‑M2/251‑35 (MQ=255)                                  ccAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTTTACCCAAGGG‑TTTTTCCCTACCCTgg                                                                                                                                                                                                                  >  2:407307/1‑251 (MQ=255)                                      aCGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagat                                                                                                                                                                                                                <  1:424636‑M2/250‑42 (MQ=255)                                                 aaTCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatga                                                                                                                                                                                                    >  1:481185‑M2/1‑198 (MQ=255)                                                                agagTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTCTACCCAGGCG‑TTTTCCCCTACCGTGGCAAACATTTCTTTAATCAGGCTTTCTCttt                                                                                                                                                                                    <  1:167557/251‑1 (MQ=255)                                                                  agTACATCTCGCCGTTTTTTCGCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc                                                                                                                                                                                   >  2:73267‑M2/1‑181 (MQ=255)                                                                    tACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTCTACCCAGGCG‑TTTTCCCCCACCGCGGCAAACATTTCTTTAATCAGGCTTTTTCttttttt                                                                                                                                                                                >  1:104220/1‑250 (MQ=255)                                                                              cGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTCTACCCAGGCG‑TTTTCCCCCACCGTGGGAAACATTTCTTTAATTAGGCTTTCTCTTTTTTCAACTTCttat                                                                                                                                                                      >  1:425629/1‑248 (MQ=255)                                                                                  ttttCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac                                                                                                                                                                    >  1:396424‑M2/1‑165 (MQ=255)                                                                                       tcAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgcttttgagaacgacagc                                                                                                                                                              <  2:202955‑M2/251‑92 (MQ=255)                                                                                            tCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                                                                                                                                         <  1:301777‑M2/251‑97 (MQ=255)                                                                                            tCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGAAACGTTGGGAGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactt                                                                                                                                                         <  1:471808‑M2/251‑97 (MQ=255)                                                                                                                cGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt                                                                                                                                     >  2:140988‑M2/1‑135 (MQ=255)                                                                                                                   aaCGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                                                                                                                                  <  1:60737‑M2/251‑120 (MQ=255)                                                                                                                            agTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                                                                                                                             <  1:398949‑M2/247‑125 (MQ=255)                                                                                                                               aaCGTTGGGGGCAATCAGTACGTTATCACCGATTGTTACGGTGTAGTCATCGACATTGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGACCCGGAAGATAAAGAgggaatgactccaacttattgatagtgttttatgttcagataatgcccgctgaccttgtcatgcagctccaccgattgtgagaactacagcgacgaccgtcccagccgtgccatttgcggcctcatattca                                                                                                                      >  2:484818‑M2/1‑120 (MQ=255)                                                                                                                                  gTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttagtgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggt                                                                                                                   >  2:341207‑M2/1‑117 (MQ=255)                                                                                                                                         gCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccg                                                                                                            >  1:1612‑M2/1‑110 (MQ=255)                                                                                                                                                gTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaatt                                                                                                     <  1:111366‑M2/251‑149 (MQ=255)                                                                                                                                                         cACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgt                                                                                             <  1:85247‑M2/250‑157 (MQ=255)                                                                                                                                                                        ggtaGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgatt                                                                             >  1:329904‑M2/2‑79 (MQ=255)                                                                                                                                                                           attcaTCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacg                                                                          <  2:76141‑M2/249‑176 (MQ=255)                                                                                                                                                                                      aTGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcc                                                               <  1:12653‑M2/251‑187 (MQ=255)                                                                                                                                                                                                      ttGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgtgattc                                                >  2:471808‑M2/1‑49 (MQ=255)                                                                                                                                                                                                         cATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatac                                            >  1:202955‑M2/1‑46 (MQ=255)                                                                                                                                                                                                                aTTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgtgaacgacagcgacttccgtcccagccgtgccaggagctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggcc                                     <  1:272559‑M2/251‑213 (MQ=255)                                                                                                                                                                                                                          atatGGATGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcacgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgcttacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgt                           <  1:452136‑M2/251‑223 (MQ=255)                                                                                                                                                                                                                            atGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTCTACCCAGGCG‑TTTTCCCCTACCGTGGCAAACATTTCTTTAATCAGGCTTTCTCTTTTTTCAACTTCTGATGGATGCGAGTGATTAAACTCATACATTAACGTTTTCCCACGAAGTCTTTTTTCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGat                        <  1:41711/251‑1 (MQ=255)                                                                                                                                                                                                                                aTGTTGGAACCGTAAGAGAAATAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatcc                      <  2:88255‑M2/250‑228 (MQ=255)                                                                                                                                                                                                                                           gTAAGAGAAATAGACAGGCGGTTCTACCCAGGCG‑TTTTCCCCTACCGTGGCAAACATTTCTTTAATCAGGCTTTCTCTTTTTTCAACTTCTGATGGATGCGAGTGATTAAACTCATACATTAACGTTTTCCCACGAAGTCTTTTTTCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGTCATGTTCAATGCGATCACTCCGTTATGATATGtttgtagtataa         <  2:43101/251‑11 (MQ=255)                                                                                                                                                                                                                                                  aaaTAGACAGGCGGTTCTACCCAGGCG‑TTTTCCCCTACCGTGGCAAACATTTCTTTAATCAGGCTTTCTCTTTTTTCAACTTCTGATGGATGCGAGTGATTAAACTCATACATTAACGTTTTCCCACGAAGTCTTTTTTCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTc  <  1:407307/251‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                        GACGCCTGGATTAATAACCACATGACTTCCGATCCAGACGTTATTGCCAATCGTTATCGGAAAAGAGTACATCTCGCCGTTTTTTCTCAATTCATGGTGTACAGGGTGTCCCGTAACGGAAAGAGTAACGTTGGGTGCAATCAGTACGTTATCACCGATTGTTACCGTGTAGTCATCGACAATGGTTAAATTGAAATTTGCATAAAAATTGCGGCCTATATGGATGTTGGAACCGTAAGAGAAATAGACAGGCGGTTCTACCCAGGCG‑TTTTCCCCTACCGTGGCAAACATTTCTTTAATCAGGCTTTCTCTTTTTTCAACTTCTGATGGATGCGAGTGATTAAACTCATACATTAACGTTTTCCCACGAAGTCTTTTTTCCGGTAAGCCTTCGCACATATCGGTAAATAGCTTGCCTGCTCTTATTCTTTCGGTCATTGGCATGTTCAATGCGATCACTCCGTTATGATATGTTGGTCGGATAAGGCGCTC  >  NC_000913/361411‑361902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.