New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3901122 =	30 (0.630)	13 (0.270)	13/484	1.8	30.2%	coding (1099/1617 nt)	bglH	carbohydrate‑specific outer membrane porin, cryptic
	?	NC_000913	= 4499511	NA (NA)					noncoding (1331/1331 nt)	IS2	repeat region

ATAGGCCGGGCGAACAACCGCACGAATAGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATGGTATTGGTATTAATCTGCTGTTTGTTTTGCAGG  >  NC_000913/3900877‑3901372                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                           ataGGCCGGGCGAACAACCGCACGAATAGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTa                                                                                                                                                                                                                                                        <  1:251690/250‑1 (MQ=255)      accggagagtaacggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTcgcg                                                                                                                                                                                                                                                  >  2:471902‑M1/241‑251 (MQ=255)           cGAACAACCGCACGAATAGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccc                                                                                                                                                                                                                                             <  1:174763‑M1/251‑12 (MQ=255)               caacCGCACGAATAGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCagga                                                                                                                                                                                                                                           >  1:352631/1‑249 (MQ=255)                  cggaatagcagagagcttcgtgaaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGgag                                                                                                                                                                                                                                      >  1:152580‑M1/229‑251 (MQ=255)                            aGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCAGAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTg                                                                                                                                                                                                                             <  2:81314/250‑1 (MQ=255)                              aTTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccccctgaatctccagacaacc                                                                                                                                                                                                                          >  1:278510‑M1/1‑221 (MQ=255)                                        aaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTg                                                                                                                                                                                                                             >  1:380305‑M1/207‑238 (MQ=255)                                        aaaacgataaagcgtgactacatcagtatcatgcccaaaccagacgggttaacggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTg                                                                                                                                                                                                                             <  2:380305‑M1/32‑1 (MQ=255)                                                 gcCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtg                                                                                                                                                                                                       >  1:434835‑M1/1‑202 (MQ=255)                                                       ttCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGtt                                                                                                                                                                                                  >  1:14486/1‑250 (MQ=255)                                                                 tatatatCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatact                                                                                                                                                                                         >  1:456524‑M1/1‑186 (MQ=255)                                                                            aaaccagacgggttaacggcagcaaagaaccttgcagatgcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcggcacgggaatatctgcggcagcgggcttgtaattggttaagtgataacagatgtctggaaatataggtgcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCGCCGTTATCAAATTTCTGCGTTAAAGATGAACCAAACAGCCAgg                                                                                                                                                                            >  2:456963‑M1/171‑251 (MQ=255)                                                                            aCCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagact                                                                                                                                                                             >  2:281886‑M1/1‑175 (MQ=255)                                                                            aCCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAg                                                                                                                                                                             <  2:410359/250‑1 (MQ=255)                                                                                 aGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTTAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCt                                                                                                                                                                       <  1:437269/251‑1 (MQ=255)                                                                                     gttaaCAATCTCGTTACCTACAATGAAATGATCGCCAATATAGTGTTCGCCCTGTGAAGCCAGACGTACCGCTGATCCGCCGGTGTGATCAACATAATAACAACCATTCAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGGTAATCGCGACCAGGAAGGAGAATTCATTGAAGCCACCTTTATAAGATTTCCGCGTTAAAGATGTGACAAACATTCAGGTATCttttc                                                                                                                                                                   >  2:271464/4‑249 (MQ=255)                                                                                        aaCAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggaga                                                                                                                                                                 >  1:123580‑M1/1‑163 (MQ=255)                                                                                            cggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCtt                                                                                                                                                                      >  2:154929‑M1/155‑241 (MQ=255)                                                                                            cggcagcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCtt                                                                                                                                                                      <  1:154929‑M1/87‑1 (MQ=255)                                                                                                             gcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCt                                                                                                                                           >  2:3606‑M1/138‑251 (MQ=255)                                                                                                             gaaatgaTCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCt                                                                                                                                           <  1:337807/251‑1 (MQ=255)                                                                                                               agaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaagtggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGa                                                                                                                                         >  1:186725‑M1/136‑251 (MQ=255)                                                                                                                     cGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCt                                                                                                                                   <  1:142884/251‑1 (MQ=255)                                                                                                                       ccAATATAGGCTTCGACCTGCGAAGACAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGAAGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATTGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTACAGATGTGCAAAACATCCAGGTATCTTTCCAGTAATAATACCCGTTATTATCTTGATTATCttt                                                                                                                                 >  2:488619/1‑251 (MQ=255)                                                                                                                           tataGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTcc                                                                                                                             >  2:211395/1‑251 (MQ=255)                                                                                                                            ataGGCTTCGCCCTGAGACGTCAGACGCACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGAGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGCAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTNCCg                                                                                                                            >  2:448365/1‑251 (MQ=255)                                                                                                                              aGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggcaccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacg                                                                                                                          >  1:438145‑M1/1‑125 (MQ=255)                                                                                                                                ataacgaatggcatccgcatagttcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATg                                                                                                                         >  1:300591‑M1/119‑250 (MQ=255)                                                                                                                                          gCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTGTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGttt                                                                                                              <  1:488102/251‑1 (MQ=255)                                                                                                                                                 cAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTg                                                                                                        >  1:248743/1‑250 (MQ=255)                                                                                                                                                   gACGTCCCGCTGTTCCGCCGTTGTGATCACCATAATAACGGCCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGTAAGGAGAATTCGTTGAAGCCACCTTTATCAAATGTCTGCGTTAAAGATGTGCCAATCATCCAGGTATCTTTCCAGTCATAATCCCCGTTATTATCCTGATTATCTTTTTCCTATGCGCTTTCGTTTGCCTTGACa                                                                                                     <  2:303122/251‑1 (MQ=255)                                                                                                                                                     cgttccGCTGTTCCGCCGGTGTGATCACCATCATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTTCCAAACATCCAGGTATCTTTCCAGTCATCATACCCGTTATTATCCGGATTATCTTTTTCCGATGCGCTTGCGTTTGCCGTGACATa                                                                                                   <  2:472099/247‑1 (MQ=255)                                                                                                                                                           gCTGTTCCGCCGGTGTGAGCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattg                                                                                             <  2:459021‑M1/251‑156 (MQ=255)                                                                                                                                                                             tCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGc                                                                           >  1:14141/1‑251 (MQ=255)                                                                                                                                                                                      taaCGACCATTAAAGGTGGCACATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAACTTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGAAATAACGACCACTTACCATTAAGGTGGCTTTATcccc                                                                  >  2:217720/1‑250 (MQ=255)                                                                                                                                                                                             cATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACggg                                                           <  2:389874/251‑1 (MQ=255)                                                                                                                                                                                                       ggtAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTta                                                  <  1:211395/250‑1 (MQ=255)                                                                                                                                                                                                                    gcgcCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAAt                                    <  1:47945/251‑1 (MQ=255)                                                                                                                                                                                                                     cgcCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCTTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAAtg                                   >  2:344566/1‑251 (MQ=255)                                                                                                                                                                                                                      gcCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgt                                   >  2:179013‑M1/1‑37 (MQ=255)                                                                                                                                                                                                                        cAGCATAACGGCCAAAGTTACTGAAGATAGAGTTATTCGCGACCCGGAAGGAGCATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGTCAAACATCAAGGAATCTTTCCAGCCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAAtggt                                 >  2:52863/1‑250 (MQ=255)                                                                                                                                                                                                                         agatgtctggaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAAtggtat                               <  2:294682‑M1/222‑1 (MQ=255)                                                                                                                                                                                                                          acATAACGGCACAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAAGAGAATTCTTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCTAAACATCCAGGTATCTTTCCATTCATAGTACTCGGTATTATCCTGATTAGCTTTTTCCGATGTGCTGTCGTTTGCGGTGACATAACGAACACTTACCATTAGTTTGGCTTTGTCCCAGAACGGGAAAGCTTTAGAGCGTAAATCAAtagtatt                              <  2:197959/250‑1 (MQ=255)                                                                                                                                                                                                                            aTAACGGCCAAAGTTACTGGCGATAGAGTTAtagactggccccctgaatctccagacaacaactatcacttaaataagagatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggagtaccacacaggaaaagatcgcaattgttcagcagagctttgaatcggggatgacggtctccctcgttgcacggcaacatggtgtagcagcc                            >  2:51636‑M1/1‑31 (MQ=255)                                                                                                                                                                                                                            aTAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAAtggtattgg                            >  1:370645/1‑251 (MQ=255)                                                                                                                                                                                                                                cGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATggtattggtatt                        >  2:66985/1‑251 (MQ=255)                                                                                                                                                                                                                                  gaaatataggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATGGTATTGGTATTa                       <  1:294121‑M1/230‑1 (MQ=255)                                                                                                                                                                                                                                     aaaGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATGGTATTGGTATTAATct                   <  2:248743/251‑1 (MQ=255)                                                                                                                                                                                                                                     aaaGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAAAGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATATTTATAGCGTAAATCAATGGTATTGGTATTAATct                   >  1:56283/1‑251 (MQ=255)                                                                                                                                                                                                                                          tACTGGCGATCGAGTTATTAGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGCGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATGGTATTGGTATTAATCTGCtgt              >  2:197057/1‑251 (MQ=255)                                                                                                                                                                                                                                          ggggcaaatccaAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATGGTATTGGTATTAATCTGCtgt              >  1:294682‑M1/13‑251 (MQ=255)                                                                                                                                                                                                                                                   tAGAGTTATTAGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATGGTATTGGTATTAATCTGCTGTTTGTTTTGc     >  2:462439/1‑251 (MQ=255)                                                                                                                                                                                                                                                      agTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATGGTATTGGTATTAATCTGCTGTTTGTTTTGCAgg  <  2:14141/251‑1 (MQ=255)                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                           ATAGGCCGGGCGAACAACCGCACGAATAGATTCGAAATCAGAGTGGGCGCCTGTTTCGTAGCTATATATATCGTTACCGAAGGAGTAAACAATCGCGTTAGCTACAATGAAATGATCGCCAATATAGGCTTCGCCCTGCGAAGTCAGACGTACCGCTGTTCCGCCGGTGTGATCACCATAATAACGACCATTAAAGGTGGTAAATGGACTTGCGCCAGCATAACGGCCAAAGTTACTGGCGATAGAGTTATTCGCGACCAGGAAGGAGAATTCGTTGAAGCCACCTTTATCAAATTTCTGCGTTAAAGATGTGCCAAACATCCAGGTATCTTTCCAGTCATAATACCCGTTATTATCCTGATTATCTTTTTCCGATGCGCTTTCGTTTGCCGTGACATAACGACCACTTACCATTAAGGTGGCTTTATCCCATAACGGGATATCTTTATAGCGTAAATCAATGGTATTGGTATTAATCTGCTGTTTGTTTTGCAGG  >  NC_000913/3900877‑3901372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.