New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3088323 =	34 (0.720)	5 (0.110)	5/480	3.2	12.8%	coding (40/1395 nt)	galP	galactose:H(+) symporter
	?	NC_000913	4507459 =	NA (NA)					noncoding (1221/1221 nt)	IS30	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTT  >  NC_000913/3088081‑3088569                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                        aCATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGttt                                                                                                                                                                                                                                                 >  1:346411/1‑251 (MQ=255)       cTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACg                                                                                                                                                                                                                                                    <  1:186834/242‑1 (MQ=255)       cTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACg                                                                                                                                                                                                                                                    >  2:186834/1‑242 (MQ=255)         tttCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAAttgtagattcaat                                                                                                                                                                                                                                            <  2:305832/248‑13 (MQ=255)              gTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTcc                                                                                                                                                                                                                                    >  2:138156/1‑251 (MQ=255)                                            aaTCTATGATGATATAATTCATGTATTTTCATGTACTTAAATCATAACTAAGATATATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTTACATCTTTTTACTTCGTACTCTCCTATCGTAATTCACAATAAAAAATAACCATATTGGAGGGCTTCTTGCCTGACGGTAATAATCAGGGGCGGTCACACAAGGCAATGACGTTTTTCGTTTGCTTCCTTGCCGGTCTGGCGGGATTACTCTT‑TGGcc                                                                                                                                                                                                     <  2:246277/251‑1 (MQ=255)                                                                                   aaTCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTg                                                                                                                                                              <  2:143679/251‑1 (MQ=255)                                                                                             aaGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCt                                                                                                                                                                                                                                          <  1:123050/166‑1 (MQ=255)                                                                                             aaGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCt                                                                                                                                                                                                                                          >  2:123050/1‑166 (MQ=255)                                                                                                  aaaTGTTAGTGAAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGACGTACTCACCTATCTTAATTCACAATACCAAATAACCATATTGGCGGGAATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTTTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TTGACTGGATATCGGTGTAATTGCTGGCGCACTGCCGGTTATTGCAGATGAATTcc                                                                                                                                                  >  2:201574/1‑248 (MQ=255)                                                                                                           tgtAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGc                                                                                                                                      >  1:90509/1‑251 (MQ=255)                                                                                                                   aTTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTTGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCa                                                                                                                               >  1:88480/1‑250 (MQ=255)                                                                                                                    ttACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTACTCTCTCGCGCAATGCCGTTTATTTCAGATGAATTACAGATTACTTCGCACATGCa                                                                                                                               >  2:365029/1‑249 (MQ=255)                                                                                                                           gATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGAGTAATCTT‑TTGCCTGGATATCGGCGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATNGGt                                                                                                                      >  2:435716/1‑251 (MQ=255)                                                                                                                                           caTCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTGGCCGCTCTGGCGGGATTACTCGT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTGCGCACACGCAAGAATGGGTCGTAAGCTCCatgatg                                                                                                      <  1:201574/251‑1 (MQ=255)                                                                                                                                            aTCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGt                                                                                                     >  1:61855/1‑251 (MQ=255)                                                                                                                                                   taagtcgaACTCGCCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGAATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTACTTGACGCGCTGGCGGGATTACTCTTGTGGC‑TGGCTATCGGGGTAATTGCTGGCGCACTGCCGTTTTTTGCTGATGAATTCCAGATTACTTCGCACACGCAAGAATATGTCGTTAGCTCCATGTTGTTCgtgtc                                                                                              >  2:321749/4‑247 (MQ=255)                                                                                                                                                         gtACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCAACCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGATTCCTTGCCGCTCTGGCGGGATTAATCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGAAGt                                                                                        >  1:91315/1‑251 (MQ=255)                                                                                                                                                          tACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGACGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGACTAACCTT‑TGGCCTGGCTATCGGTGTAATTGCTGGCGCACAGACGTTTTTTGCAGATGAATTCAAGATTACTTCAAACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGtg                                                                                       >  2:226554/1‑250 (MQ=255)                                                                                                                                                                         atacacaATAAAAAGTACCCATATAGGAGGGCATCGTGCCTGCCGCTAAAAAAAAAGGGCGCTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTAGCCGGATTGCTCTT‑TTGCCTGGATGTCGTTGTAATGGCTAGCGCACCGCCGTTTATTGCAGTTGATTTCCAGATCTCGTCGCACCCGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGGGCGACAATcagtgcggtctgcagc                                                                        <  2:480760/248‑8 (MQ=255)                                                                                                                                                                                      aaTAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCt                                                           <  2:259743/251‑1 (MQ=255)                                                                                                                                                                                       aTAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCtt                                                          >  1:283531/1‑251 (MQ=255)                                                                                                                                                                                         aaCCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGGTTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAAATCCAGATTAATTCGCCCACGCAAGAATGGGTCGGAAGCTCCATGATGTTCGGTGCGGCAGGCGGTGCGGGGGGCCACGGCGGGCTCTCCttt                                                         >  2:98474/1‑250 (MQ=255)                                                                                                                                                                                           ccATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACATTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TTGCCTAGATATCGGTGTAATTGCTTGCGCACTGCCGTTTATTGCAGATGAATTCCa                                                                                                                                                 <  1:472517/160‑1 (MQ=255)                                                                                                                                                                                              tatTGGAGGGCATCATGCCTGACGCTATAAAACAGGGGCGGCCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTTTTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGGTCGGTGCCGCAGGCGGTGCGGTGGGCCGGGGCTGGGTCTCCTTTAAACTc                                                   >  1:410166/1‑251 (MQ=255)                                                                                                                                                                                              tatTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCCGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCTTTAAAccc                                                   >  2:268524/1‑249 (MQ=255)                                                                                                                                                                                               atTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCATATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGGCGGGGCGGTGGGCAGCGGCGGGCTCTCCTTTCAACTCg                                                  >  2:336853/1‑251 (MQ=255)                                                                                                                                                                                                  ggAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCTTTAAACTCGGgc                                               <  1:138156/251‑1 (MQ=255)                                                                                                                                                                                                               ccTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTG‑TGTGGGCAGCGGCTGGCTCTCCTTTAAACTCGGGCGCAAAAAGAGCCtg                                 >  2:13074/1‑251 (MQ=255)                                                                                                                                                                                                                           aaaCAGGGGCGGTCAAACCAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATTTCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGGGGGCAGCGGCTGGCTCTCCTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGgcgc                      >  2:398395/1‑251 (MQ=255)                                                                                                                                                                                                                                        cAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCTTTAAACTCGGGCGCAAAAAGAGCCTGATGCTCGGCGCCATTTtgtttgtt         >  2:261890/1‑251 (MQ=255)                                                                                                                                                                                                                                        cAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTtgtttgtt         >  1:58521/1‑251 (MQ=255)                                                                                                                                                                                                                                             aaGGCAATGACGTTTTTCGTCTGCTTCCTTGCCCCTCTGGCGGGATTACTCTT‑TGGCCTGCATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGACTTCGAGATTACTTCGCACACGCAAGAATGGGGCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCCTTAAACTCGGGCGCAAAAACAGCCTGATGCTCGGCGCAATTTTGTTTGTTGCCgg    >  1:272073/1‑251 (MQ=255)                                                                                                                                                                                                                                               ggCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCTGATGAATTCCAGATTACTTCGCACACGCCAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGTCTGGCTCTCCTTTAAACTCGGTCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGtt  <  1:321749/251‑1 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                        ACATTTCTTTTCAGTAAAGTCTTAATTGCAGATAACAGCGTTTAATCTATGATGATATAACTCAATTATTTTCATGCACTTAAATCATAACTAAGATAAATGTTAGTGTAAGCGATTACACTGATGTGATTTGCTTCACATCTTTTTACGTCGTACTCACCTATCTTAATTCACAATAAAAAATAACCATATTGGAGGGCATCATGCCTGACGCTAAAAAACAGGGGCGGTCAAACAAGGCAATGACGTTTTTCGTCTGCTTCCTTGCCGCTCTGGCGGGATTACTCTT‑TGGCCTGGATATCGGTGTAATTGCTGGCGCACTGCCGTTTATTGCAGATGAATTCCAGATTACTTCGCACACGCAAGAATGGGTCGTAAGCTCCATGATGTTCGGTGCGGCAGTCGGTGCGGTGGGCAGCGGCTGGCTCTCCTTTAAACTCGGGCGCAAAAAGAGCCTGATGATCGGCGCAATTTTGTTTGTTGCCGGTT  >  NC_000913/3088081‑3088569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.