New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2765412 =	8 (0.170)	14 (0.360)	13/396	1.4	74.6%	intergenic (‑259/+101)	abpA/yfjM	anti‑bacteriophage protein/protein YfjM
	?	NC_000913	= 2765419	3 (0.080)					intergenic (‑266/+94)	abpA/yfjM	anti‑bacteriophage protein/protein YfjM

GACAATTTTGCGAAAATTAAGGAGATGTTATGACACAGTCCAATCGGATCACTGCATCATCACCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGCTCTCTGCT  >  NC_000913/2765166‑2765660                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                         gACAATTTTGCGAAAATTAAGGAGATGTTATGACACAGTCCAATCGGATCACTGCATCATCACCAGTGATCTAAATCCTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCgcac                                                                                                                                                                                                                                                       <  2:88362/250‑1 (MQ=255)   cAATTTTGCGAAAATTAAGGAGATGTTATGACACAGTCCAATCGGATCACTGCATCATCACCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCgcactat                                                                                                                                                                                                                                                    >  1:194249/1‑251 (MQ=255)            gAAAATTAAGGAGATGTTATGACACAGTCCAATCGGATCACTGCATCATCACCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCgcactatggcactatg                                                                                                                                                                                                                                           >  1:26933/1‑251 (MQ=255)                       agaTGTTATGACACAGTCCAATCGGATCACTGCATCATCACCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGTTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCgcactatggcactatggcactatggca                                                                                                                                                                                                                                <  1:303693/251‑1 (MQ=255)                                          aaTCGGATCACTGCATCATCACCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCgcactatggcactatggcactatggcactatggcactatggcact                                                                                                                                                                                                              >  2:315949/1‑250 (MQ=255)                                                  catcaccagtgatctaaatacttcacagccattctcggtcgcaggtatcaagcttttcaggattccacaaatattgtaaccctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCg                                                                                                                                                                                                     <  1:124062‑M1/54‑1 (MQ=255)                                                          catcaCCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccg                                                                                                                                                                                             <  1:124062‑M2/251‑55 (MQ=255)                                                                             gcaattccgggtcgcaggtatcaagcttttcaggattccacaaatatttaaaccctgacgtctaatttggttatataaattactgccccaactaacgtaaggtaggcacagccttaatcaagtttttggttttcaaatagttcagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGAtatt                                                                                                                                                                          >  2:487131‑M1/171‑251 (MQ=255)                                                                                     gcaattccgggtcgcaggtaTCAAGCTTTTCAGGATTCCACAAATATTTAAACCCTGACGTCTAATTTGGTTATATAAATTACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGTTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatatt                                                                                                                                                                  >  2:487131‑M2/10‑170 (MQ=255)                                                                                                  caagtttttcaggattccacaaattttgtaaccctgacatctaatttggtaatataacatactgccacaacgaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagtgcagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCat                                                                                                                                                     >  2:249836‑M1/150‑251 (MQ=255)                                                                                                  caagcttttcaggattccacaaatattgtaacccttacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCat                                                                                                                                                     >  1:290129‑M1/150‑251 (MQ=255)                                                                                                          cAAGTTTTTCAGGATTCCACAAATTTTGTAACCCTGACATCTAATTTGGTAATATAACATACTGCCACAACGAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTGCAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcat                                                                                                                                             >  2:249836‑M2/1‑149 (MQ=255)                                                                                                          cAAGCTTTTCAGGATTCCACAAATATTGTAACCCTTACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcat                                                                                                                                             >  1:290129‑M2/1‑149 (MQ=255)                                                                                                           aaGCTTTTCAGGATACAACAAATATTTTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGTTTTTGGTTTTCAAATAGTTCAGAGTTGAGACCGCCAACCGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCtg                                                                                                                                            <  1:386518/251‑1 (MQ=255)                                                                                                                      aaatattgtaacccttatgtctaattttgttatataacttcctgccccaccaaacgtaaggtaggcacagccttaatcaaggtttgtgttttcaaatagttcagaactgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATTGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGt                                                                                                                                 >  2:358447‑M1/130‑251 (MQ=255)                                                                                                                              aaaTATTGTAACCCTTATGTCTAATTTTGTTATATAACTTCCTGCCCCACCAAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTGTGTTTTCAAATAGTTCAGAACTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactattgcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcattatttcctggttggtagggt                                                                                                                         >  2:358447‑M2/1‑129 (MQ=255)                                                                                                                                   ctgacgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttaagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATAGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGc                                                                                                                    <  2:299408‑M1/135‑1 (MQ=255)                                                                                                                                     gacgtctaatttggttatataacatactgccccaactaacgaaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgGCACTATGGCCCTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGct                                                                                                                   >  2:390774‑M1/115‑250 (MQ=255)                                                                                                                                       cgtctaatttggttatataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTCTAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCtt                                                                                                                <  1:208601‑M1/139‑1 (MQ=255)                                                                                                                                           cTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTAAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatagcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcattatttcctggttggtagggtcatatctcgatgc                                                                                                            <  2:299408‑M2/251‑136 (MQ=255)                                                                                                                                             gACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGAAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGgcactatggccctatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcattatttcctggttggtagggtcatatctcgatgct                                                                                                           >  2:390774‑M2/1‑114 (MQ=255)                                                                                                                                               cGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattctaaaacacagttgcacgcattatttcctggttggtagggtcatatctcgatgctctt                                                                                                        <  1:208601‑M2/251‑140 (MQ=255)                                                                                                                                                    aaTTTGGTTATATAACATACTGCCCCAACTAACGGAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTc                                                                                                     <  2:26933/249‑1 (MQ=255)                                                                                                                                                      tataacatactgccccaactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAAc                                                                                                  <  2:286289‑M1/153‑1 (MQ=255)                                                                                                                                                          gTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATcgc                                                                                             >  2:22089/1‑251 (MQ=255)                                                                                                                                                              tataACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcattatttcctggttggtagggtcatatctcgatgctctttgagcaatgtcaac                                                                                          <  2:286289‑M2/250‑154 (MQ=255)                                                                                                                                                                      aactaacgtaaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCt                                                                                 <  1:355667‑M1/170‑1 (MQ=255)                                                                                                                                                                            cgtaaggtaggcacagccttaatcaaggtgttggttttcaaatagttcagggctgaggcgtccaaccgcactatgGCACGATGGCACTATGGCACTATGGCACTAGGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACTCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACAGCGCGTGTTCATGGCTTTCtat                                                                           >  2:208601‑M1/76‑251 (MQ=255)                                                                                                                                                                              aaCTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcattatttcctggttggtagggtcatatctcgatgctctttgagcaatgtcaacatcgcgtgttcatggct                                                                         <  1:355667‑M2/251‑171 (MQ=255)                                                                                                                                                                               aaggtaggcacagccttaatcaaggttttggttttcaaatagttcagagctgagaccgccaaccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATAtt                                                                        <  2:297206‑M1/179‑1 (MQ=255)                                                                                                                                                                                    cGTAAGGTAGGCACAGCCTTAATCAAGGTGTTGGTTTTCAAATAGTTCAGGGCTGAGGCGTCCAACCGCACTATGgcacgatggcactatggcactatggcactagggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcactcattatttcctggttggtagggtcatatctcgatgctctttgagcaatgtcaacagcgcgtgttcatggctttctat                                                                   >  2:208601‑M2/1‑75 (MQ=255)                                                                                                                                                                                       aaGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcattatttcctggttggtagggtcatatctcgatgctctttgagcaatgtcaacatcgcgtgttcatggctttctatatt                                                                <  2:297206‑M2/251‑180 (MQ=255)                                                                                                                                                                                                                                       cgccaaccgcactatgGCACTATGGCACTATGGCATGATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTGGGTAGGGTCATATCGCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGTACCCCACTCCTTAGAGCTCATCATGATGGCTTGtt                >  2:194249‑M1/17‑251 (MQ=255)                                                                                                                                                                                                                                             ccgcactatgGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGc          <  1:251955‑M1/241‑1 (MQ=255)                                                                                                                                                                                                                                               cGCCAACCGCACTATGgcactatggcactatggcatgatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcattatttcctggtgggtagggtcatatcgcgatgctctttgagcaatgtcaacatcgcgtgttcatggctttctatattgttgatgccttgcccatccgtaccccactccttagagctcatcatgatggcttgtt        >  2:194249‑M2/1‑16 (MQ=255)                                                                                                                                                                                                                                                     ccGCACTATGgcactatggcactatggcactatggcactatggcactatggcactatggcaccgccagcgattgtaatcacacttgatattataaaacacagttgcacgcattatttcctggttggtagggtcatatctcgatgctctttgagcaatgtcaacatcgcgtgttcatggctttctatattgttgatgccttgcccatccggaccccactccttatagctcatcatgatggcttgttttgggc  <  1:251955‑M2/251‑242 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                         GACAATTTTGCGAAAATTAAGGAGATGTTATGACACAGTCCAATCGGATCACTGCATCATCACCAGTGATCTAAATACTTCACAGCCATTCTCGGTCGCAGGTATCAAGCTTTTCAGGATTCCACAAATATTGTAACCCTGACGTCTAATTTGGTTATATAACATACTGCCCCAACTAACGTAAGGTAGGCACAGCCTTAATCAAGGTTTTGGTTTTCAAATAGTTCAGAGCTGAGACCGCCAACCGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACTATGGCACCGCCAGCGATTGTAATCACACTTGATATTATAAAACACAGTTGCACGCATTATTTCCTGGTTGGTAGGGTCATATCTCGATGCTCTTTGAGCAATGTCAACATCGCGTGTTCATGGCTTTCTATATTGTTGATGCCTTGCCCATCCGGACCCCACTCCTTATAGCTCATCATGATGGCTTGTTTTGGGCTCTCTGCT  >  NC_000913/2765166‑2765660

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.