Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	270,520	T→C	pseudogene (243/263 nt)	insN →	IS911A regulator fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	270,520	0	T	C	100.0%	118.0 / NA	52	pseudogene (243/263 nt)	insN	IS911A regulator fragment
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (25/27);  total (25/27)

CACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAA‑CTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGG‑CAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTT  >  NC_000913/270229‑270813                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                      cACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATAtt                                                                                                                                                                                                                                                                                               >  1:61221/1‑300 (MQ=9) cACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCACAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATAtt                                                                                                                                                                                                                                                                                               >  2:242097/1‑300 (MQ=9)   ccTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATCCGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTaa                                                                                                                                                                                                                                                                                             >  1:288690/1‑300 (MQ=9)   ccTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTaa                                                                                                                                                                                                                                                                                             >  2:350793/1‑300 (MQ=9)      gAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTaaaaa                                                                                                                                                                                                                                                                                          >  2:395237/1‑300 (MQ=9)      gAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTaaaaa                                                                                                                                                                                                                                                                                          >  1:518778/1‑300 (MQ=9)      gAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAAAGTATTGAAATGGAAAACGAAATATTaaaaa                                                                                                                                                                                                                                                                                          >  1:170052/1‑300 (MQ=9)           gagGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAGAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCACTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCt                                                                                                                                                                                                                                                                                     >  2:162053/1‑300 (MQ=9)           gagGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTagaagcggct                                                                                                                                                                                                                                                                                     >  2:121364/1‑291 (MQ=9)           gagGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCt                                                                                                                                                                                                                                                                                     >  1:192868/1‑300 (MQ=9)           gagGTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCt                                                                                                                                                                                                                                                                                     >  2:162209/1‑300 (MQ=9)             ggTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCAGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAANGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTAc                                                                                                                                                                                                                                                                                   >  2:192843/1‑300 (MQ=9)              gTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGN‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACt                                                                                                                                                                                                                                                                                  >  1:619448/1‑300 (MQ=9)              gTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTAcc                                                                                                                                                                                                                                                                                  >  2:409520/1‑299 (MQ=9)              gTGATATGCTCACCTCAGAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGC‑CAAGCTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCAACTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCAGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTAcc                                                                                                                                                                                                                                                                                  >  2:368482/1‑299 (MQ=255)                               gAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCa                                                                                                                                                                                                                                                                 >  1:382453/1‑300 (MQ=255)                               gAACAACACAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCACTATCACGCCGGAACAAATTGAGCTACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAGACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCa                                                                                                                                                                                                                                                                 >  2:745400/1‑300 (MQ=255)                                   aacaCAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGc                                                                                                                                                                                                                                                             <  1:22278/300‑1 (MQ=255)                                    acacAGGTGCCTTAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCa                                                                                                                                                                                                                                                            <  1:514097/300‑1 (MQ=255)                                        aggtgccttAATGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACac                                                                                                                                                                                                                                                        <  1:489140/292‑2 (MQ=2)                                                  aTGAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACTGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATCTGTCAATGCAACacccctttcaat                                                                                                                                                                                                                                              <  1:344271/300‑12 (MQ=2)                                                    gAAAAAACGAAATTTCAGTGCAGAATTCAGACGTGAATCAGCCCAG‑CTGGTTGTGGATCAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTTACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGACATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAAc                                                                                                                                                                                                                                            <  2:543435/300‑1 (MQ=255)                                                                                             gcccagctggttgtggatcAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACGGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACCTTTAc                                                                                                                                                                                                    >  2:664452/19‑300 (MQ=12)                                                                                               ccagctggttgtggatcAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTAcag                                                                                                                                                                                                  <  2:372123/284‑1 (MQ=12)                                                                                                cagctggttgtggatcAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTAcagc                                                                                                                                                                                                 <  2:310243/285‑1 (MQ=12)                                                                                                             atcAGAACTATACAGTTGCAGATGCCGCGAAAGCCATGAATGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGcc                                                                                                                                                                                    <  2:551442/298‑1 (MQ=12)                                                                                                                           gttgcagatgccgcgaaagccatgaaTGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACt                                                                                                                                                                      >  2:11385/26‑300 (MQ=12)                                                                                                                              gcagatgccgcgaaagccatgaaTGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAAAGTATTGAAATGGAAAACGAAATATTAAAAAAGGGTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGGGGTTTTTTGACTGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATg                                                                                                                                                                   >  2:514408/23‑300 (MQ=12)                                                                                                                                    gccgcgaaagccatgaaTGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACNAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGgaagaa                                                                                                                                                             <  1:641909/284‑1 (MQ=17)                                                                                                                                                   aaTGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCACTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAg                                                                                                                                              >  1:33726/2‑300 (MQ=17)                                                                                                                                                    aTGTCGGGCTTTCCACCTTGACGCGGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAAAAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACGACAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGt                                                                                                                                             >  2:813293/1‑300 (MQ=17)                                                                                                                                                                         cgcgGTGGGTAAAGCAATTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGt                                                                                                                        <  2:452694/300‑1 (MQ=17)                                                                                                                                                                                 ggtaaagcaattactggacgaacgggcaggCAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGNAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAANCATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAAc                                                                                                                 <  2:689216/272‑1 (MQ=17)                                                                                                                                                                                         aTTACGGGACGAACGGGCAGG‑CAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGa                                                                                                        >  1:645409/1‑300 (MQ=17)                                                                                                                                                                                                           caggCAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACTAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAgg                                                                                       <  2:184103/298‑1 (MQ=14)                                                                                                                                                                                                           caggCAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAgg                                                                                       <  1:227294/298‑1 (MQ=17)                                                                                                                                                                                                            aggCAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAggg                                                                                      <  1:750770/299‑1 (MQ=17)                                                                                                                                                                                                             ggCAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGa                                                                                     <  1:426463/300‑1 (MQ=17)                                                                                                                                                                                                              gCAAAACACCGAAAGCATCCCCTATCACGCCGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATTAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGAt                                                                                    <  1:353017/300‑1 (MQ=17)                                                                                                                                                                                                                               tcccctatcacgccGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAAcc                                                                   >  1:733615/13‑300 (MQ=14)                                                                                                                                                                                                                                 ccctatcacgccGGAACAAATTGAGATACGTGAGCTGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAAccac                                                                 >  1:221977/11‑298 (MQ=14)                                                                                                                                                                                                                                            cGGAACAAATTGAGATACGTGAGCGGAAGAAAAAAATTCAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTTAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAg                                                      <  2:379510/300‑1 (MQ=14)                                                                                                                                                                                                                                                                  gttgaagaaaaaaattcAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCTGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGacac                                <  2:162631/284‑1 (MQ=255)                                                                                                                                                                                                                                                                  gctgaagaaaaaaattcAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGacac                                <  1:713066/284‑1 (MQ=255)                                                                                                                                                                                                                                                                  gctgaagaaaaaaattcAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGacac                                <  2:674825/284‑1 (MQ=255)                                                                                                                                                                                                                                                                  gctgaagaaaaaaattcAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGGCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGacac                                <  2:110770/284‑1 (MQ=255)                                                                                                                                                                                                                                                                  gctgaagaaaaaaattcAACGGATTTAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTAGGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGacac                                <  2:106854/284‑1 (MQ=11)                                                                                                                                                                                                                                                                  gctgaagaaaaaaatgcAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGacac                                <  1:779454/284‑1 (MQ=255)                                                                                                                                                                                                                                                                   ctgaagaaaaaaattcAACGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACt                               <  1:716438/285‑1 (MQ=255)                                                                                                                                                                                                                                                                            aaaattnaaCGTATTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATNCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAgcg                      <  2:722201/293‑1 (MQ=255)                                                                                                                                                                                                                                                                                        aTTGAAATGGAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACg          <  2:671983/300‑1 (MQ=38)                                                                                                                                                                                                                                                                                                ggAAAACGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGtt  <  1:121858/300‑1 (MQ=21)                                                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                                      CACCTGAACAGAGGTGATATGCTCACCTCAGAACAACACAGGTGTCATAATGAAAAAAAGAAATTTCAGCGCAGAGTTTAAACGCGAATCCGCTCAA‑CTGGTCGTTGACCAGAACTACACCGTGGCAGATGCAGCCAGCGCTATGGATGTCGGCCTTTCCACAATGACGCGATGGGTGAAACAATTACGTGATGAACGG‑CAGGGCAAAACACCAAAAGCCTCCCCCATTACCCCGGAACAAATTGAAATCCGTGAGCTCAGGAAAAAGCTACAACGTATTGAAATGGAAAATGAAATATTAAAAAAGGCTACTGTAGATTCAATTGGTCAACGCAACAGTTATGTGAAAACATGGGGTTGCGGAGGTTTTTTGAATGAGACGAACATTTACAGCAGAGGAAAAAGCCTCTGTTTTTGAACTATGGAAGAACGGAACAGGCTTCAGTGAAATAGCGAATATCCTGGGTTCAAAACCCGGAACGATCTTCACTATGTTAAGGGATACTGGCGGCATAAAACCCCATGAGCGTAAGCGGGCTGTAGCTCACCTGACACTGTCTGAGCGCGAGGAGATACGAGCTGGTT  >  NC_000913/270229‑270813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑