| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,466,432 | 0 | A | G | 25.0% | 84.2 / 24.0 | 48 | pseudogene (1041/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Reads supporting (aligned to +/- strand): ref base A (16/20); new base G (4/8); total (20/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGG > NC_000913/1466158‑1466725 | aTCTGGATGTCAGCGGCGGCGTTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTgg < 1:45245/300‑1 (MQ=255)aTCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGTCGACAGCGCGACGGTGGATAACAAGGGCACCACGACCGTCACCGAGCCGGAGTCCATGGGT‑AGCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTgg < 1:398314/300‑1 (MQ=255) tATTGATATCACCGGTGACAGCGCAACGGTGGATAACAAGGGCACCACGACCGTCACCGATCCGGAGTCCATAGGT‑ATCCAGATCGACGGCGACCAGGCCATCGTCAACAACGCAGGCGAGAGCACCATCACCACCTTTGTCACCGTCACTCAGATTAATGGTGATGACGCCACGGTAGTAGGGAACGGCGAGGGTGCTCGTGGA‑‑TGTGGGGAAGATACAGGTACGGAAATCGACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGa < 1:563472/300‑1 (MQ=9) aTTGCTATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCAAGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGAAAGGATTCCAACGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATATGGACGTCAGCGGCGACAGTCAAAGTATTGat > 1:314985/1‑300 (MQ=18) aTTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCCTACCCGTCCCCAATAAGGAGTCCCTGGGT‑ATCCAGATCGACGATGACAAGGCCATCTTTAATCACGCAGGCGAAAGCACCATCAACAACGGTGGCACCGGCACCCAGATTAATGGTGGTGACGCAACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGAAAGGATTCCACAGGTACGGAAATCGACGGTAGTGACGGGAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACAGTactgct > 2:57582/1‑295 (MQ=17) ttGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata < 1:551414/300‑1 (MQ=255) ttGACATCACCGTTGACAGTTCGACGGTGAATAACAAGGACACCATGACCGTCACTGAGCCGGGGTCTAGGGGT‑ATCAAGATCGACGTTTGCGAGGCCATAGGCAAGAACGAAGGAAAGAGCACTAGCACCAACGGTGACATCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGata < 1:19214/300‑1 (MQ=18) gATATCACCGTTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATc < 1:186579/300‑1 (MQ=255) ggATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATaa > 1:523690/1‑300 (MQ=255) aTAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACa < 2:514432/300‑1 (MQ=255) gggCACCATGACCGTTATCGATCAGGAGGCCA‑GGGTGAGCCAGATCGACGTCGACAAGGTCATTGGCAATAACGAAGTCGAGAGCATTAGCGCCAACGGCGGCATCGGCACCCAGATTAATGTTGATGACGCCACGGTAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCAc < 2:206566/300‑1 (MQ=17) tGACCGCCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGTTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACTGTGGCACCGGCACCCAGATNAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCg < 1:279958/300‑1 (MQ=255) cctgAGTCCATGGTT‑ATCCAGATCGACGTTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGTTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAg < 1:478634/297‑1 (MQ=255) cGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGNCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGTTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CTTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACAGTAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGTGGGCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGt < 2:310587/300‑1 (MQ=255) gTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCAt > 2:704311/1‑300 (MQ=255) gTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGACAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGCAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGAACGTCAACGACCAGGAGTcaat > 2:235135/1‑297 (MQ=255) cATGGGT‑ATCCAGATCGACGGGGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACTGGAAGGTGATTCAGGACGGCGATCTGGATGTCAGCTGCGGCGGTCACGGTATTGATATCACCGGCGACAGTGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCgg < 1:742418/300‑1 (MQ=11) cAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTAACGACGCCACCGCAAACAACAACGGAAAAACCCC‑CGTTGCCAGCCAAGG‑TTCCAAAGGGACGGAAAGCAACGGTAGTAAAGGAAAAGTTATTCAGGACGGTGATATGGATGTCAGCGGCGGCGGTCACGGTATTGATATCGCAGGTGACAGCGCAACGGTGGATAAAAAGGGCAACATGACCGTCACAGATCCGGAGTCCATCGGTATACAGGTTGAAGGCGACCAGGc > 2:477563/1‑300 (MQ=17) aaGGTCATCGTCAATAACGAAGACGAGAGCGCTAGCAACAACCGCAGCACCGGCACCAAGATTACGGGTGATGACGCCACGATAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGTAAAGATTCCACCGGTACGNAAATCAACGGTAATAACGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGTCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCg < 2:485475/300‑1 (MQ=14) gTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACTCAGATTAATGGTGATGACGCCACGGCCCACAAACATGGCAAAAACAC‑CGTTGAC‑GTAAAGGCTTCCACCGGTGCGGAACTTGATGGCAATAGCGGGCCGGTTCTTCATGAAGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAAAAAGGGCACCATGAACGTCACCGATCCGGAGTACATCGGTATCCAGATTGAAGGCGAACAGGCGGTTGTTaat > 2:105238/1‑299 (MQ=2) cACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAA‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGCAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCCTGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGAAGGCGACCAGGCGGTCGTCAACAACGAAGGCGAGAGCACCAt > 2:599366/1‑300 (MQ=255) aTCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCAATCGTCAATAACGAAGGCGAGAGCACTATCAcc > 2:703117/1‑300 (MQ=11) tCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCATCGTCAATAACGAAGGCGAGAGCACTATCACCa < 1:719900/300‑1 (MQ=255) aataactgtggcattggtatttaGATTAAGGGTGATGACGCCACGGTAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAAc < 1:697605/278‑1 (MQ=17) gaggtgtataatagacagtgttattacgggTGATAATGCCACAGTAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGNGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCNGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACgg < 2:334923/272‑1 (MQ=11) cGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAAAAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGATTGTTAACAACGAAGGCGAGAGCGCCATCAACAACGGTgg > 2:577418/1‑300 (MQ=255) tGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCAGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCAc > 1:519439/1‑300 (MQ=255) caccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCgg > 1:239922/1‑300 (MQ=255) tgttattacgggTGATAATGCCACAGTAAACAACAATGGCAAAACCAC‑CGTTGAC‑GGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTACCAACGAAGGCGAGAGCGCCATCACCAACggctgtatcttatccccatc > 1:339957/11‑282 (MQ=11) gATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATTAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTaa > 1:49117/1‑300 (MQ=255) gATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGAACAGGCGGTTGNTAATAACGAAGGCGAGAGCGCCATCACCAACGGCGGCACCGGCACGCNGAtcaa > 2:338920/1‑297 (MQ=255) tacgggTGATAATGCCACAGTAAACAACAATGGCAAAACCAC‑CGTTGAC‑GGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAGCGGTGGCACCGGCACGCAGATTAACgg < 1:358482/296‑1 (MQ=11) tacgggTGATAATGCCACAGTAAACAACAATGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACgg < 2:264238/296‑1 (MQ=255) tacgggTGATAATGCCACAGTAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACgg < 2:419345/296‑1 (MQ=14) tAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGTAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACgg < 1:576874/300‑1 (MQ=255) ggTGATAATGCCACAGTAAACAACAATGGCAAAACCAC‑CGTTGAC‑GGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGtgat > 2:312689/1‑300 (MQ=14) tgatgaCGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGtgatga < 1:433983/300‑1 (MQ=255) cGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCAATCGTCAACAACGAAGGCGAGAGCACCATCACCAATGGCGGCACCGGCACTCAGATCAACGGTAATGACGCCAc > 1:232638/1‑300 (MQ=11) acaacaacGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATNACCGGCGACAGCGCAACGGTGGATAANAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGATTGACGGCGACCAGGCAATCGTCAACAACGAAGGCGAGAGCACTATCACCAACGGCGGCACCGGCACGCAGATTAACGGtaacgaagccaccgcgaataaca > 2:619369/1‑278 (MQ=11) aaCCAC‑CGTTGAC‑GGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAaccac < 1:361767/300‑1 (MQ=255) aaCCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAaccac < 1:349578/300‑1 (MQ=255) ac‑cGTTGAC‑GGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGtt < 1:317118/300‑1 (MQ=255) ac‑cGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTCATTCAGGACGGCAATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGACACCATGACCGTCAACGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCAATCGTCAATAACAAAGGCGAGAGCACCATCACCCACGGCGGCACCGGCACTCAGATTAACGGTGCCGACGCCCCCGCaaataatagtggaaaaaagaccgtt > 2:475130/1‑278 (MQ=11) aaGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAt < 1:687532/300‑1 (MQ=255) ttCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGTGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAc < 1:490714/300‑1 (MQ=255) tCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCTGTTGTTAATAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAcc < 1:577914/300‑1 (MQ=255) gTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCNGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGATTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTAATGACGCCNCAGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACgg > 2:384769/1‑300 (MQ=255) taaCGGAAAAGTGATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCAGGACCGTCACCGACCCGGAGTCCATCGGTAGCCAGGGCGACGGCTACCAGGATGTCGGCAACAACGAAGGCGAGAGCGCCATCATCAAAGTCGGCACCGGTACGCAGATGAACGGTGAGGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACgg < 2:574255/300‑1 (MQ=14) | ATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGT‑ATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCAC‑CGTTGAC‑GGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTATTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGG > NC_000913/1466158‑1466725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |