| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 781446 | 29 (0.350) | 3 (0.050) | 3/442 | 6.7 | 10.1% | intergenic (+2/‑131) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 781655 = | 32 (0.520) | intergenic (+3/‑430) | lysQ/nadA | tRNA‑Lys/quinolinate synthase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCA > NC_000913/781165‑781736 | gTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGt < 1:354330/300‑1 (MQ=255) gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAACCTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCCTCCTGCACGACCCCCCCATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTCACACCCGTATGGGTCGTTAGCTCCGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGAACCACCAATTTAAAGGTGGTTACTGGTaga > 1:119717/1‑300 (MQ=255) agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCGAATACAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGGCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGATTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTagag < 1:274340/300‑1 (MQ=255) agCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTagag < 1:185060/300‑1 (MQ=255) cAGTTGACTTTTAACCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGaa < 1:191027/300‑1 (MQ=255) aCTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTGTAACATCGAAGACAGATGTTAAGCGTTTAGGATAACGTTGCGTCAGCAACGTCCCTTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGaa < 2:101925/300‑1 (MQ=25) cAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGt < 1:305562/300‑1 (MQ=255) cTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGAACCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTGAGGTGGT‑AGAGCAGTTGACTTTTAATCGATTGGTCGCAGGTTCGAATCCTGCACGAACAACCAATTTAAAGGTGGTTACTGGTCGAGAACGTGCAGGATAACGTTGCGTTAGCAACGGCACGAAgg > 1:183335/1‑300 (MQ=38) aCCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGTGAATCCCCCCTCACTAACCCCCCATCTCAAAAATTTGCCCCTCATACACATCTCTCAGGTAACACCCATATGAGTCTTCCGCCAAATCAAT‑CAAACCGTCGACTTCTACTCCCTTGGTCGCAGTTCCGAATCATGCACGAACCACCAAGTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGAc > 2:632651/1‑300 (MQ=255) aaGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCTGAGGGCGAGCTAAGCGGTTCATCCTGTACGACCCACCAATTTTAAAGATTGGCCACGAGTAAAAATCTTTCAGTTAACACCCGTATGGGTCGTTAGCTCAGTTGTT‑AGAGCAGTTGACTTTTAATCAATTGTTCGCGGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTGCTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑TAGACGAAGTCGAGTCATCCTGCACGACCCACCATcc < 1:132466/300‑1 (MQ=25) tGAAGGATAACGTTGCGCCAGCAACGGCCCGGAGGGCGAGCGAATCGAGTCATCCGGCACGACCCACCAATCTTAAAGATTGGTCCTGAGTAAAAATCTTTCAGTTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACGGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAAt < 2:553726/300‑1 (MQ=255) aaGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCTAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGATTAAAAATCTTTCAGTTAACACCCGTATGGGTCGTTAGCTCAGTTGTT‑AGAGCAGTTGACTTTTACTCGATTGTTCGCAGGGTCGAATCCTGCACGACCCACCAGTTTAAAGGTGGTGACTGGGAGGGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑TAGACGAAGTCGAGTCATCCTGCACGACCCACCAtgtaaaaaag < 1:646460/300‑10 (MQ=37) ggctAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGACGCGAGTCCTCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGCGTAAAACCCTTTAAGGTAACACCCTTATGGGTCGTTAGCTCAGTCGGT‑AGAGTAGTTGACTTTTAATCAATTGGTCGCAGGTNCGAATCCTGCACGCCCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACTTTGCGTTAGCAACGGCCCGAAGGGA‑GAGACGAAGTCGAGTCATCCTGCACAACCAACAATCATGAATGAtt > 2:150332/4‑300 (MQ=255) ggATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCAGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTAGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATCTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGCTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCAACCATCCTGAATGAtt > 1:58505/1‑300 (MQ=255) acggtGCGCCAGCAACGGCCCGTAGTGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGgc < 1:552509/296‑1 (MQ=255) cGGCCCGTAGTGCAAGCTAAGCTAGTTAGCCTGCACGACCCACCAATCTGAAAGGTGGGCTCCTAGTAAGAATCTTTCAGGGAACACCCTTATGGGTCGGTGGCTAAGG‑GGTGAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCaa < 2:119216/300‑1 (MQ=21) gaGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCACCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGCAGGATAACGTTGCGTTAGCAACGGCACGAAGGGC‑GAGACGAAGTCGCGTCATCCTGCACGACCCACCACCCTGAATGAGTAAGACAGAATAACCACCAAAGGGGCCGTAAGCTCAGTTGGTa > 2:103317/1‑300 (MQ=25) cATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGATTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGTTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTTGGTAGAGc < 1:590047/300‑1 (MQ=255) aTCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGANCGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTAAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTTGGTAGAGCa > 2:158318/1‑300 (MQ=255) aTCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGCATGGGTCGTTAGCTCAGTTGGT‑AGGGCAGTTGACTTTTACTCAATTGGTCGCAGGTTCGAATCCTGCACGAACCACCAATTTAAAGGTGGTTACTAGTAGAGACCGTGAAAGATAACGTTGCGTTCGCCACGGCCCGAAGGGC‑GAGACGAAGTGGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCAGAAAGGGGTCGTTAACTCAGTTGGTAGAGcc > 2:563149/1‑299 (MQ=255) tGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGAAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTg > 2:641971/1‑300 (MQ=255) aaaaTCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGGTGGT‑GTAGCAGTGGACGTTTAATCAATGGGTCGCAGGGTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCAc < 2:219634/300‑1 (MQ=38) ctctttcatttaccacCCTTATGGTTCGTTAGCTCAGTTGTT‑AGAGCAGTTGACTTGTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGTGAGAGAACGTGAAGGATAACTTTGCGTTAGCAACGGCCCGAAGGGC‑TAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAATGCAGCATAACCCCTCAATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGAc < 1:6088/287‑1 (MQ=25) agttAACACCCGTATGGTTCGTTAGCTCAGTTGGT‑AGAGCAATTGACTTTGAATCAATTGGTCACAGTTGCGAATCCTGCACGACCCACCAATCTCAAGGTGTTTACTGTTAGAGAACGTGAAGAATAACGTTGCGTTAGCAACGGCCCGAAGGGCTGA‑AAGAGGTAGAGTCAGCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTTGTTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACccaccga < 1:283048/297‑3 (MQ=37) gTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATg > 1:644131/1‑300 (MQ=255) acacCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACACACCAATTTAAAGGTGGTTCCTGGTAGAGAACGTGAAGGATAACACTGCGTTAGCAACAGCAAGATGGGT‑GAGACGAAGGCGAGTCATCATGCACGAACAACCATACTAAATGAGTAAGGAAGAATAGCCACGAAAGGGGTCGTTAGCGCAGTTGGTAGAGCAGTTGAATTGTACTCCGTTGGTCGCAGGTTCGAATCCGGAGCGACCCAACAATgcaa > 2:336040/1‑297 (MQ=16) cAGGTTCGAACCCTGCACTACCCACCAATTTAAAGGTGGGTACTGGGAGAGAACNTGAAGGATAACGTTGCGTTAGCAACGGCCCTGAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATGAATGCAGCATAATCCCGCAATGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAANAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTgcag < 2:606232/300‑1 (MQ=25) gTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCCAAGCTTCGaccgtacagccg > 2:262816/1‑289 (MQ=255) aCCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCa > 1:427988/1‑300 (MQ=255) | GTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAGTTTTAACATCAAACTCAGATGTTAAGCGTGAAGGATAACGTTGCGCCAGCAACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATCTTAAAGATTGGCCCCGAGTAAAAATCTTTCAGGTAACACCCGTATGGGTCGTTAGCTCAGTTGGT‑AGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATTTAAAGGTGGTTACTGGTAGAGAACGTGAAGGATAACGTTGCGTTAGCAACGGCCCGAAGGGC‑GAGACGAAGTCGAGTCATCCTGCACGACCCACCATCCTGAATGATTAAGGCAGCATAATCCCGCAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCA > NC_000913/781165‑781736 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |