| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,846,683 | 0 | G | T | 25.8% | 109.6 / 13.8 | 63 | Q244K (CAA→AAA) | hycD | formate hydrogenlyase subunit HycD |
| Reads supporting (aligned to +/- strand): ref base G (14/32); new base T (16/0); total (31/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.32e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATAATGTTGACCTAATTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTC > NC_000913/2846442‑2846929 | aTAATGTTGACCTAATTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACgg < 2:95311/251‑1 (MQ=255) aaTGTTGACCTAATTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGa < 2:30015/250‑1 (MQ=255) tGACCTAATTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTTCATTTTTCCCC‑CCCGAATaaa > 1:100913/1‑250 (MQ=255) tGACCTAAGTTTTCGTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATGTGTCCCC‑TCGGAATaaa < 2:270419/250‑1 (MQ=255) ccTAATTTTTCTTCAGACATGCCCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGCCGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGGCAC‑AA‑GG‑TTCCCTTTTGTccccccgaaaaacaacc > 2:424280/1‑238 (MQ=255) aaTTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCcg < 1:9502/251‑1 (MQ=255) aTTTTTATTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCATCAGCAGTCCACCGGCGG‑TG‑GA‑AG‑TGTCCCTTTTTCCCC‑CCGGAATAAA‑CAc‑cccc > 1:353277/1‑249 (MQ=255) ttcttcAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCGCCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGTAATAAA‑CGC‑CCcgacga < 2:222343/250‑1 (MQ=255) cAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATc < 1:205616/250‑1 (MQ=255) gACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGc < 1:375371/251‑1 (MQ=255) aCATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGACACCAACGCTAAAAATCCAAAGCCAAACCCAACCCAGGTCATGCGCGGAGTAATATCAAGCCGCAGAAGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCCCCAGTTTTACGATGGCAATCACCAGCGCCCGCAGCAGTACACCGGCGG‑CG‑GC‑GG‑ATTCCATTTGTCCCC‑ACAGAATAAA‑CAA‑CCcgacgacaatcttc > 1:73361/1‑242 (MQ=255) cAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTGTTACGATGTCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CGC‑CCGGACGAACATCTGCAAcaccac < 2:31470/251‑1 (MQ=255) cACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGc < 1:104725/250‑1 (MQ=255) cGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑GTTTCATTTGTTCCC‑ACGGAATAAA‑CAC‑CCCGACGAAAATCTGCAACACCACCAGCTGTTT‑CAGGGTGATA‑CCCCCTTTTATGAC‑g > 1:49428/1‑251 (MQ=255) tAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑CCGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCCGTTT‑CAGGCTGATA‑CCCCATTTTCTGAC‑Gcccaaac > 1:157932/1‑246 (MQ=255) tAAAAATGCAAAGACAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑GTTTCATTTTTCCCC‑CCGGGATAAA‑‑ACACCCGACGAACATCTGCAACACCACCAACTGTTT‑CAGGCTGATA‑ACCCATTTTATGAcccccaaa > 1:340718/1‑243 (MQ=255) aaaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAgcc < 1:234637/251‑1 (MQ=255) aaaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAg < 2:132332/249‑1 (MQ=255) aaaaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAAACAGGACGCCGACCACCAGTTTTAAGATGGCAATCACCAGCGCAAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTTTCCCC‑CCGGAATAAAACAC‑CCC‑AAGAACATATGCAACACCCCCAGCCGTTT‑CAAGCTGAAAACCCCTTTTCA‑GAC‑GCCaaaaccc > 1:75437/1‑247 (MQ=255) aaTGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGAAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCCCCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAgccgct < 2:258312/251‑1 (MQ=255) cAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTTTCCCC‑CCGGAATAAA‑CAC‑CCCGACGAACAACTGCAACCCCCCCAGCTGTTT‑CCGGCCGATA‑CCCCCTTTCATGAA‑GCCAAAACCGCCGGCGCTGTAt > 1:450838/1‑251 (MQ=255) ccccagcccagGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCa < 2:315011/250‑1 (MQ=255) atatCAAGACGCAGACGGGCCAAGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑CG‑AA‑GG‑GTTCCATTTTTTCCC‑CCGGGAAAAA‑CAC‑CCCACCGAACAACTTACACACCACACGCTGTTTTCAG‑CTGATA‑CCCCCTCTCATTAC‑GCCAAAACCCCTCCCACCGTATGTAGAGAGCGGtcctt‑cctctcgcccctc > 2:307543/1‑241 (MQ=255) tatCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TGGAA‑GG‑TT‑CCATTTTTCCCC‑CCCGGATAAA‑AAC‑CCCCACGAACAACTTCCACACCACCCGCCGTTT‑CAGGCCGGTA‑CCCCCTTTCATGGC‑CCCAAAAACCCTGCCCCCGTATTTAGAGAGCGGGCCTT‑TCT‑Gccccccccgc > 2:337002/1‑242 (MQ=255) tatCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAAAACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCCGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCCGCTcccgc > 1:347717/1‑248 (MQ=255) cAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑GA‑GG‑TTTCCCTTTTTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CCGGCTGGTA‑CCCCATTTCATGAC‑GCCCAAGCCGCTGCCGCCGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCCCCTGCTC‑GG‑CTTccc > 1:108745/1‑250 (MQ=255) aGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑AG‑AA‑GGGTTTCC‑TTTTTCCCC‑CCCGAAAAAA‑CCC‑CCCCAACAAAAACTGCAACACCACCCGCTGTTT‑CAGGCTGACA‑CCCCCATTCTTGAC‑GCCAAAACCCCCGCCCCCGTATTCAGAAGGCCGGCCTT‑CCttccgccccccccccgcttcccc > 1:237446/1‑229 (MQ=255) gACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AAAGG‑TTTCC‑TTTTTCCCC‑CCGGGATAAA‑CAC‑CCCCCCGAACATATGCAACACCACCCGGTGTTT‑CCGGCTGCTA‑CCCCCTTTCATGAC‑GCCAAATCCGCCGCCGCTGGTTTCAAAGAGCGGGCCTT‑TCT‑GCAGCCCCCGCTC‑GGGCTTcccc > 1:194790/1‑249 (MQ=255) cGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑GTTTCATTTTTCCCC‑ACGGAAAAAA‑AAC‑CCCCCCGAACATCTTCAACACCACCAGCCGTTT‑CAGGCTGATA‑CCCCATTTTATTAC‑GCCAAAGCCGCTGCCCCTGTATTCCGAGAGCGGGCCTT‑CCT‑GCAGCTCCCGCTC‑GG‑CTTCCGcc > 1:333719/1‑249 (MQ=255) aTGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑GTTTCATTTTTTCCC‑ACCGGATAAA‑CAA‑CCCCACAAACATCTGCAAAACCACCAGCTGGTT‑CAGGCTGATA‑CACCACTTCATGAA‑GCCAAAGCCGCCGCCGCTGGATTCAGAGGGGCGGCCTT‑CCT‑GCAGCTCCTGCCC‑GG‑CTTCCGCCCGGTCGa > 2:20796/1‑250 (MQ=255) aTGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑AG‑AATGT‑TTTCCGTTATCCCCC‑CCGGAAAAAA‑AAC‑CCC‑ACGAACATCTGCCACACCACCCCCCGTTT‑CATGCTCATA‑CCCCATATCATGACCACCCAA‑CCGCTGCCGCTTTCTTCATAAAGCGGGCCTT‑CCTTGC‑GCCCCTTCTC‑GG‑CTTccaccctggaga > 2:348410/1‑240 (MQ=255) gTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACgg < 2:49428/249‑1 (MQ=255) gTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCa < 2:341398/251‑1 (MQ=255) cGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑GTTCCATTTGTCCCC‑CCGGAATAAA‑CAC‑CCCCACGAACATCTGCAAAACCACCCGCCGTTT‑CAGGCTGGTA‑CCCCCTTTCATGAC‑GCCCACCCCCCCGCCCCTGTATTTAGAGCGCGGGCCTT‑CCT‑CCCGCCCCCGCCC‑GG‑CCTCCCCCAGGTCGAACGGCCGtttt > 2:359896/1‑250 (MQ=255) gAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAGCGGCAGTTTGc < 1:447235/251‑1 (MQ=255) cAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCa < 1:148774/251‑1 (MQ=255) gcgATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCCGTTTGCCCATTTc < 2:81331/251‑1 (MQ=255) ggACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTg < 1:151497/251‑1 (MQ=255) cGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑GTTCCATTTTTCCCC‑ACCGAATAAA‑AAC‑CCCGACGAACAACTGCAACACCACCCGCTGTTT‑CAAGCTGATA‑CACCAATTCATTAC‑GCCAAAGCCCCTGCCGCTGTATTCAGAGAGAGGGCCTTTCCT‑‑CAGCTCCTGCTC‑GG‑CGCCCCCCAGGCCGAAGGGCGGGTTTCCCCTTTCGGTAAAggggggg > 1:159278/1‑246 (MQ=255) gCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TGGAG‑GG‑TTTCCATTT‑TCCCC‑CCGGAAAAAA‑CAC‑CCCCACCAACATCTGCAACACCACCCGCTGTTT‑CCGGCTGATA‑CCCCCTTTTCTGAC‑GCCCCAGCCCCCGCCGCCGTATTCAGAGAGCGGGCCCT‑CCC‑GCCGCCCCTGCTCCGC‑CTTCC‑CCCGGGCGAAAGGCAGGTTTCCCCTTTCTATAAAgggggggg > 2:349129/1‑245 (MQ=255) caccaGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGcac < 2:375150/251‑1 (MQ=255) aGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGc < 2:450838/251‑1 (MQ=255) aGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑GTTCCATTTGTCCCC‑ACGGAATAAA‑AAC‑CCCGACGAACAACTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTTATGAC‑GCCAAAACCGCTGCCGCTGTATTCAGAAAGCGGGCCCT‑CCT‑CCAGCTCCCGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGGTTTCCCACTTCGATAAAGGGGGCGAACGCACAggg > 1:313905/1‑250 (MQ=255) aCGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGATGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCTCAGGCACAAAg < 1:159493/251‑1 (MQ=255) aCGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAg < 1:45128/251‑1 (MQ=255) aCGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAg < 1:418215/251‑1 (MQ=255) gATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑AG‑AC‑GG‑CTTCCCTTTTTCCCC‑CCGGAATAAA‑AAC‑CCCGACGAACATCTGCAACACCCCCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAACCGCCGACGCTGTATTTAGAGAGCGGGGCCT‑CCT‑GCAGCTCCTGCCC‑GG‑CTTCCGCCAGGGCGGACGGCAGTTTGCCCCTTTCGATAAAAGTGGCGAACGCCCAGGccacaagcg > 1:437671/1‑243 (MQ=255) tGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAgg < 2:155221/194‑1 (MQ=255) tGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑GTTCCATTTTTTCCC‑ACGGAATAAA‑CAC‑CCCGACGGACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCCTTTTATGAC‑GCCCAAGCCGCTGCCGCTGTATTTAGAGAGCGGGGCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAgg > 1:155221/1‑194 (MQ=255) ggCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCAt < 1:108810/118‑1 (MQ=255) ggCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGcc < 2:340718/250‑1 (MQ=255) ggCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑AG‑GTTCCATTTGTCCCC‑ACGGAATAAA‑AAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑CCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCCCCTGCCC‑GG‑CTTCCCCCAGGGCGAACGGGAGTTTTCCCATTTCGATAAAAGGGGCGAACGCACAGGCACAAAACGccc > 1:55564/1‑250 (MQ=255) tCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCCCACG‑AAAAAA‑CAC‑CCCGACGAACAACTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCACGAC‑GCCCAAACCGCTGCCGCTGTATTTAGAGAGCGGGGCCT‑CCC‑GCCGCTCCTGCTC‑GG‑CTTCCGCCCCGGCGGACGGGCGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGccaaaaaggcccgaaac > 1:75047/1‑235 (MQ=255) agTCCACCGGCGG‑TG‑AA‑GG‑GTTCCATTTGTCCCC‑CCGGAATAAA‑CAC‑CCCCCCGAAAATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCCTTTCATGAC‑GCCAAAACCGCTGCCGCTGTATTTAGAGAGCGGGCCTT‑CCT‑GCAGCTCCCGCCC‑CG‑CTTCCCCCAGGGCGGACGGCAGGTTGCCCCTTTTGGTTAAGGGGGCGAAAGCAACGGCCCAAAACGCCCGGACCAGCGGGaaggttcggcc > 2:245344/1‑241 (MQ=255) cACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGc < 1:359896/251‑1 (MQ=255) ggcgg‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGcc > 1:65069/1‑251 (MQ=255) g‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTg < 1:196780/251‑1 (MQ=255) g‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCTGCCAGTGAt < 1:156893/251‑1 (MQ=255) aa‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGAt > 1:229673/1‑250 (MQ=255) aa‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATa < 1:349129/251‑1 (MQ=255) aaggatgccATTTGTCCCC‑ACTGAATAAA‑CAC‑TCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCACAGCCGCTGCCGCTGTATTCAGAGAGCCGGCCTT‑CCT‑GCAGCTCCTGCCC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCCCAGGCACAACTCGCCAGTACCAGCGGGCTGCTCTGGCTCAGCTGCCAGTGAt > 2:289742/8‑250 (MQ=255) gg‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATaa > 2:270616/1‑250 (MQ=255) aTTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTc < 1:98973/251‑1 (MQ=255) | ATAATGTTGACCTAATTTTTCTTCAGACATGCTCAAACTCTCTTTAATCACGCCGCCAGCAAGGAGACGAACGCTAAAAATGCAAAGCCAAACCCAGCCCAGGTAATGCGCGGAGTAATATCAAGACGCAGACGGGCCATGCTGTTTTCGAACAGCGCGATAACCAGGACGCCGACCACCAGTTTTACGATGGCAATCACCAGCGCCAGCAGCAGTCCACCGGCGG‑TG‑AA‑GG‑TTTCCATTTGTCCCC‑ACGGAATAAA‑CAC‑CCCGACGAACATCTGCAACACCACCAGCTGTTT‑CAGGCTGATA‑CCCCATTTCATGAC‑GCCAAAGCCGCTGCCGCTGTATTCAGAGAGCGGGCCTT‑CCT‑GCAGCTCCTGCTC‑GG‑CTTCCGCCAGGTCGAACGGCAGTTTGCCCATTTCGATAAAGGTGGCGAACGCACAGGCACAAAGCGCCAGTACCAGCGGGATGCTCTGGCTCAGCGGCCAGTGATAAACGGTGTC > NC_000913/2846442‑2846929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |