New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	35 (0.740)	33/492	0.5	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4542158	0 (0.000)					coding (122/597 nt)	fimE	regulator for fimA

TGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATT  >  NC_000913/4541911‑4542396                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                               tGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCCGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCCGCCTGGGATCCGggt                                                                                                                                                                                                                                             <  1:467840‑M2/251‑4 (MQ=255)                     aTCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTAGTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgat                                                                                                                                                                                                                         >  2:125071‑M2/1‑228 (MQ=255)                                           ttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggggttt                                                                                                                                                                                                      >  2:268‑M2/1‑206 (MQ=255)                                                   aTTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGGTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                                                                                                                                                               >  2:292486‑M2/1‑198 (MQ=255)                                                                 gACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt                                                                                                                                                                              >  2:72715‑M2/1‑184 (MQ=255)                                                                              ttCCTATAGGTATTCATTCAAATATATCCCAGTTAGGAGTACTACTATTGTGCGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCCACGGGAGCCAGAGATTATTTGCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggggtttttgaggtgctccagtggcctctttttttatcagctgtc                                                                                                                                                                <  2:262822‑M2/251‑81 (MQ=255)                                                                                    taGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctccc                                                                                                                                                          <  2:356044‑M2/251‑87 (MQ=255)                                                                                            cattcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttatgtttctatcagctgtccctcctgttcagc                                                                                                                                                   >  1:21342‑M2/1‑157 (MQ=255)                                                                                                       atCTCAGTTAGGAGTAGTAATATTGTGAGTAAACGTAGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgtcaacctactgatttagtgtctgatggggtttttgaggtgctccagtggcttctgtttctatcacctgtcccccctgttcagctcctgacggggg                                                                                                                                       <  2:153934‑M2/251‑106 (MQ=255)                                                                                                         ctcAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtgg                                                                                                                                     <  1:413827‑M2/251‑108 (MQ=255)                                                                                                           cAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtg                                                                                                                                      >  1:74065‑M2/1‑142 (MQ=255)                                                                                                           cAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggt                                                                                                                                       >  1:109374‑M2/1‑142 (MQ=255)                                                                                                                            aTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgc                                                                                                                                                                                                                                        >  1:440678‑M2/1‑125 (MQ=255)                                                                                                                            aTTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggggatgc                                                                                                                                                                                                                                        <  2:440678‑M2/133‑9 (MQ=255)                                                                                                                               gtgAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgc                                                                                                               >  2:102304‑M2/1‑122 (MQ=255)                                                                                                                                   gTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggggcgtaacggcaaaagcaccgccgg                                                                                                            <  1:172062‑M2/250‑133 (MQ=255)                                                                                                                                     aaaCGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacc                                                                                                         <  1:61704‑M2/251‑136 (MQ=255)                                                                                                                                         gtcgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcag                                                                                                     >  2:461853‑M2/1‑112 (MQ=255)                                                                                                                                                     ccGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTCCGGGGCCACGGGCGCCCGAGATTATTGTCTTATTATGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctcctgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgc                                                                                         <  1:49509‑M2/251‑152 (MQ=255)                                                                                                                                                        gTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctct                                                                                      >  2:61704‑M2/1‑97 (MQ=255)                                                                                                                                                            agaagTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGCTGCGggtgatgctgcccacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttttgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcact                                                                                  <  1:22759‑M2/251‑159 (MQ=255)                                                                                                                                                               agTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgcc                                                                               >  1:155992‑M2/1‑90 (MQ=255)                                                                                                                                                                gTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGCGCCCAAGGTTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttactgtatgatggcgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccg                                                                              <  1:61781‑M2/251‑163 (MQ=255)                                                                                                                                                                gTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccg                                                                              <  1:226641‑M2/251‑163 (MQ=255)                                                                                                                                                                           gatgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggc                                                                   >  2:181471‑M2/1‑78 (MQ=255)                                                                                                                                                                             tgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgcccacttactgatttagtgtatgatggggtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaaagggaaaagcaccgccggacatcagcgctatccatgctctcactgccgtaaaacatggca                                                                  <  2:197559‑M2/250‑175 (MQ=255)                                                                                                                                                                             tgCAGGCGGATTGTTACGGGGCAACGGGAGCCCGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggggatgctgccaacttactgattttgtgtatgatggggtttttggggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggggggtgcgtaacggcaaaagcaccgccggacattagcgctatctctgctctccctgccggaaaacatggca                                                                  <  2:4359‑M2/250‑175 (MQ=255)                                                                                                                                                                                aGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatgttgtttttgaggtgttccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccgtacatcagcgctatctctgctctctctgccgtaaaacatggcaactg                                                              >  1:303458‑M2/1‑73 (MQ=255)                                                                                                                                                                                aGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactg                                                              <  2:100845‑M2/251‑179 (MQ=255)                                                                                                                                                                                    ggTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagt                                                          >  2:345030‑M2/1‑69 (MQ=255)                                                                                                                                                                                                                                      cATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtacaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatg        <  2:201670‑M2/251‑233 (MQ=255)                                                                                                                                                                                                                                         atCGGCATGGGCTGAGggtgatgccgcaaacttactgatttagtgtataatggcgcttttgaggtgctacagtggcttctgtttctatcagctgtacctcctgttcagctactgacggggtggggcgtagcggcaaaagcaccgccggaaatcagcgctatctctgctatcactgccgtaaaacatggccactgcagttcacttacaccacttctcaacccggtacgcaccagaaaatcattgatatggcc     <  2:20132‑M2/251‑236 (MQ=255)                                                                                                                                                                                                                                         atCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggcc     >  2:413827‑M2/1‑16 (MQ=255)                                                                                                                                                                                                                                           cGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccat   <  1:211587‑M2/251‑238 (MQ=255)                                                                                                                                                                                                                                            ggCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatg  <  1:171772‑M2/251‑239 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                               TGTAATTGACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATT  >  NC_000913/4541911‑4542396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.