New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1907879 =	0 (0.000)	25 (0.530)	24/492	0.9	100%	intergenic (‑288/+382)	yobF/yebO	DUF2527 domain‑containing protein YobF/uncharacterized protein YebO
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

ACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGATCAGACGCACAAATCTCGATACGTCTTCCACTTTTTTTGCACACTTATGCAACGGAATACGCGCCGATATATCATTGTGCTTAACCTTGCCAGTTCAGGCAGATACTTAAACTGGCGTATTTTCTAACATAGTTCAATAAGTTCAGTTGTTCCAGGCCAGTGGGAGAAGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGGGGTAAATATCTTTTTCTGATATCCCGTTACGCA  >  NC_000913/1907635‑1908128                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                           ggttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCa                                                                                                                                                                                                                                                      >  1:238265‑M1/245‑251 (MQ=255)     gctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGa                                                                                                                                                                                                                                                  >  2:179148‑M1/241‑251 (MQ=255)     gctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGa                                                                                                                                                                                                                                                  >  1:59057‑M1/241‑251 (MQ=255)           aaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATaaaa                                                                                                                                                                                                                                            >  2:80722‑M1/235‑251 (MQ=255)                                gttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCAt                                                                                                                                                                                                                       <  2:394120‑M1/38‑1 (MQ=255)                                  tattcacgctggccaacctgtttcgggcggaccaaatgatacgtccgtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATa                                                                                                                                                                                                                      <  1:421914‑M1/39‑1 (MQ=255)                                   attcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATaa                                                                                                                                                                                                                     <  2:252494‑M1/40‑1 (MQ=255)                                        cgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAAcagt                                                                                                                                                                                                               <  2:460941‑M1/46‑1 (MQ=255)                                                aacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAAc                                                                                                                                                                                                       <  2:118664‑M1/54‑1 (MQ=255)                                                                                       agatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAgg                                                                                                                                                                >  1:362182‑M1/159‑251 (MQ=255)                                                                                        gatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAggg                                                                                                                                                               <  1:290424‑M1/94‑1 (MQ=255)                                                                                             cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGt                                                                                                                                                          >  1:426621‑M1/153‑251 (MQ=255)                                                                                                                             gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGc                                                                                                                         >  2:382608‑M1/121‑251 (MQ=255)                                                                                                                                gaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCaaa                                                                                                                      >  1:460941‑M1/118‑251 (MQ=255)                                                                                                                                    cggtcaaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccgtccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCATAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCaaaaaa                                                                                                                   <  1:267198‑M1/137‑1 (MQ=255)                                                                                                                                            ataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAagaga                                                                                                          >  1:385125‑M1/106‑251 (MQ=255)                                                                                                                                                       caaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCg                                                                                               <  1:264882‑M1/157‑1 (MQ=255)                                                                                                                                                                              tcggctctaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAACAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTAAATCCCCAAAGGGATT‑TACAATTTAACATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATACTACCACGCTTa                                                                         <  2:398935‑M1/179‑1 (MQ=255)                                                                                                                                                                                            aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGatt                                                          <  2:234356‑M1/194‑2 (MQ=255)                                                                                                                                                                                               aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTa                                                        <  2:117822‑M1/196‑1 (MQ=255)                                                                                                                                                                                                aatgaaatgactcattccgccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCGCTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTaaa                                                      >  2:267198‑M1/54‑251 (MQ=255)                                                                                                                                                                                                       tgactgggtcacccgagaagactttgcccgcttattcgcagcttccCTATGCAATGAATACAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACTCTAAAGAGAAGTCAATCACCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATAGATGAATGAGCAAAAAAATCAAGAGAGAAACGTCTCGCTAATAAATAAAACCAAGCTTAATCATAAATCCGATGTAAACATCCt                                                <  2:17447‑M1/204‑1 (MQ=255)                                                                                                                                                                                                                  gccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATg                                    >  1:187045‑M1/36‑251 (MQ=255)                                                                                                                                                                                                                                                   ccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGGGGTAAATATCTTTTTCTGATATCCCGTTACg    >  1:394120‑M1/3‑250 (MQ=255)                                                                                                                                                                                                                                                    cCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGGGGTAAATATCTTTTTCTGATATCCCGTTACGCa  >  1:118664‑M1/2‑251 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                           ACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGATCAGACGCACAAATCTCGATACGTCTTCCACTTTTTTTGCACACTTATGCAACGGAATACGCGCCGATATATCATTGTGCTTAACCTTGCCAGTTCAGGCAGATACTTAAACTGGCGTATTTTCTAACATAGTTCAATAAGTTCAGTTGTTCCAGGCCAGTGGGAGAAGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTA‑AATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGGGGTAAATATCTTTTTCTGATATCCCGTTACGCA  >  NC_000913/1907635‑1908128

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.