New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3583428 =	NA (NA)	30 (1.080)	29/488	0.1	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4542158	0 (0.000)					coding (122/597 nt)	fimE	regulator for fimA

GACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGA  >  NC_000913/4541918‑4542401                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                    gACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTCATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAAAGGGAGGCAGAGATTATTGTCTTATTCTGTTGGCATATCGGACTGGGATGCGggtgatgctg                                                                                                                                                                                                                                           <  1:111977‑M2/251‑11 (MQ=255)     gATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGAATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgcca                                                                                                                                                                                                                                        >  1:249552‑M2/1‑237 (MQ=255)          ccACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacgtac                                                                                                                                                                                                                                  >  2:194086‑M2/1‑232 (MQ=255)                                 tCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGGGCCAGCGATTATTGTCTTATTCTGTTGGCATAACGGCATGGGCTGCGggggatggtgccaacttacttattttgtgtatgttgggggtt                                                                                                                                                                                                           <  2:85329‑M2/251‑43 (MQ=255)                                   tttttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgattttgtgtatgatggtgttttt                                                                                                                                                                                                         <  1:244754‑M2/251‑45 (MQ=255)                                     tttATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttg                                                                                                                                                                                                        >  2:269544‑M2/1‑205 (MQ=255)                                                          gACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt                                                                                                                                                                                   >  1:15570‑M2/1‑184 (MQ=255)                                                                       ttCCTATAGGGATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAAAGGGAGCCAGAGATTATTGTCTTTTTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagggtatgatggtgtttttgaggtgctccagtggcttctgtttctttcagctgtc                                                                                                                                                                     <  2:178455‑M2/251‑81 (MQ=255)                                                                             taGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAAAGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggggatgctgccaacttactgatttagtggatggtggtgtttttgaggtgctccagtggcttctttttctatcaactgtccctcct                                                                                                                                                               <  2:207190‑M2/251‑87 (MQ=255)                                                                                       ttcaAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTTTTGGCATATCGGCATGTGATTCGggtgatgctgccaacttactggtttagtgtatgatggtgttttttaggtgctccagtggcttctgtttctttcagctgtcccccctggtacgctac                                                                                                                                                     <  1:45098‑M2/251‑97 (MQ=255)                                                                                                  ctcAGTTAGGAGTACTACTATTGTGAGTAAACGTCGATATATTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTAAGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGAATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtgg                                                                                                                                          <  1:22292‑M2/251‑108 (MQ=255)                                                                                                                          gAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagctccgcc                                                                                                                   >  2:117152‑M2/1‑120 (MQ=255)                                                                                                                                    cgtTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagc                                                                                                         >  2:20306‑M2/1‑110 (MQ=255)                                                                                                                                          cTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggggatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctaatgacggggtggggcgtaacggcaaaagcaccgccggacatcagcgctatct                                                                                                  <  1:147710‑M2/251‑148 (MQ=255)                                                                                                                                            tACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttaatgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggggggtgcgtaacggcaaaagcaccgccggacatccgcgctatctct                                                                                                <  1:200945‑M2/251‑150 (MQ=255)                                                                                                                                                ggTAAAGAAGTTCAGGCCATGATGGAGGCGGTTTGTTACGGGGCAACTGGGGCCAGAGATTATTGGCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgttttttaggggctccagtggcttctgtttctatccgtggtccctcctgttcagccacagaaggggtggtgcgtaacggcacaagcaccgacggaaatcagcgctatctctgttc                                                                                            <  2:77532‑M2/251‑154 (MQ=255)                                                                                                                                                  tAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctc                                                                                                 <  1:57881‑M2/244‑149 (MQ=255)                                                                                                                                                  tAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctc                                                                                                 >  2:57881‑M2/1‑96 (MQ=255)                                                                                                                                                         gTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccg                                                                                   <  1:227876‑M2/251‑163 (MQ=255)                                                                                                                                                            cAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgta                                                                                 >  1:22040‑M2/1‑86 (MQ=255)                                                                                                                                                                     atgCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggc                                                                        <  1:74928‑M2/250‑174 (MQ=255)                                                                                                                                                                              gTTTGTTACGTGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgattctgccaactgactgatttagtgtatgatggtgttgttgaggtgctccagtggcttctggttctatcagctgtccgtcctgttcggctactgacggtgtggtgcgtaacggcaaaagcgccgccggacatgaccgctatgtctgctctcactgccgtaaaacatggcaactgcagtt                                                              >  1:127714‑M2/1‑68 (MQ=255)                                                                                                                                                                                            aaCGGGCGCCAGCGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgctgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgctt                                                <  2:33938‑M2/251‑198 (MQ=255)                                                                                                                                                                                             aCGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttc                                               <  1:225769‑M2/251‑199 (MQ=255)                                                                                                                                                                                               gggAGCCAGAGATTATTGTCTTATTCTGTTGGCCTATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctc                                             <  1:111125‑M2/251‑201 (MQ=255)                                                                                                                                                                                                              tggtcTTATTCGGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcac                               >  2:244754‑M2/3‑36 (MQ=255)                                                                                                                                                                                                                gTCTTATTCTGTTGGCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccag                            >  1:90221‑M2/1‑34 (MQ=255)                                                                                                                                                                                                                             ggCATATCGGCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgat                >  1:207190‑M2/1‑21 (MQ=255)                                                                                                                                                                                                                                     ggCATGGGATGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatg       <  1:164126‑M2/251‑239 (MQ=255)                                                                                                                                                                                                                                          gggATGCGggttatgctgccaactgactgattttgtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagaaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatgaatgg  >  2:151562‑M2/1‑8 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                    GACTGATAGCCACATCACTCCGTGTGTGGTTATCTTTTTATCTATTGGGCTAATTTTGACCGATTGAGGTTTCCTATAGGTATTCATTCAAATATATCTCAGTTAGGAGTACTACTATTGTGAGTAAACGTCGTTATCTTACCGGTAAAGAAGTTCAGGCCATGATGCAGGCGGTTTGTTACGGGGCAACGGGAGCCAGAGATTATTGTCTTATTCTGTTGGCATATCGGCATGGGATGCGTATTAGTGAACTGCTTGATCTGCATTATCAGGACCTTGACCTTAATGAAGGTAGAATAAATATTCGCCGACTGAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGA  >  NC_000913/4541918‑4542401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.