New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	24 (0.860)	24/488	0.3	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 323450	0 (0.000)					coding (1113/1428 nt)	ykgF	putative amino acid dehydrogenase with NAD(P)‑binding domain and ferridoxin‑like domain

GGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTCCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCTTATGCCAATAGTCATCCAGGATTGTGGAAAGTCGGGATGATGGCCGGTGCTCATGCGGCAAGCTGGTTTATCAATGGCGGCAAAACACCACTCAAATTTGGCGCGATTAGCGACTGGATGGAAGCAC  >  NC_000913/323226‑323685                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                            gggCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGGCATGGATATGGCTCTTTTTATCCAGGGCCAATTGGTGGGGTGGTTTCTCCCCTCCTTTGTGGCTATAAAGCTTTTAAAGATTTACCCTACCCCTGCTCTTTATGCACAGCCTGTGACAACGTGggtaatgactcccacttattgatagt                                                                                                                                                                                                                   <  2:75706‑M2/251‑27 (MQ=255)            ggTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttc                                                                                                                                                                                                        >  1:251241‑M2/1‑214 (MQ=255)                  ggCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagat                                                                                                                                                                                                    >  1:223913‑M2/1‑208 (MQ=255)                   gCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataat                                                                                                                                                                                                 >  2:136027‑M2/1‑207 (MQ=255)                    ccTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatg                                                                                                                                                                                                >  1:61479‑M2/1‑206 (MQ=255)                                                 aTTCGCTGCGGGGCGTGTATTAAGACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc                                                                                                                                                                    >  2:259378‑M2/1‑177 (MQ=255)                                                                                        cGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcc                                                                                                                             >  1:219994‑M2/1‑138 (MQ=255)                                                                                            atatTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtg                                                                                                                        >  2:229223‑M2/1‑134 (MQ=255)                                                                                                 ggCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                                                                                                                    >  2:75230‑M2/1‑129 (MQ=255)                                                                                                        aTGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt                                                                                                            <  1:159985‑M2/251‑130 (MQ=255)                                                                                                          ggATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATGTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattc                                                                                                           >  2:100119‑M2/1‑120 (MQ=255)                                                                                                                    ctATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgc                                                                                                  >  2:275425‑M2/1‑110 (MQ=255)                                                                                                                      agttatCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccg                                                                                                >  2:182345‑M2/3‑108 (MQ=255)                                                                                                                                         gTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagcgccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagggtatgccgctcaattcgctgcgtatatcg                                                                           >  2:179673‑M2/1‑89 (MQ=255)                                                                                                                                             ggTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTCCGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttg                                                                       <  2:249393‑M2/251‑167 (MQ=255)                                                                                                                                                            aCTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactcccacttattgctagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgcccaattcgctgcgtatatcgcttgctgattacgtgcagc                                                        <  2:176509‑M2/251‑182 (MQ=255)                                                                                                                                                                               tttaaagatttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggatt                                     <  1:64657‑M2/251‑201 (MQ=255)                                                                                                                                                                                 taaagatttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattc                                    <  2:73875‑M2/250‑202 (MQ=255)                                                                                                                                                                                       tttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcc                                                   >  2:154953‑M2/1‑43 (MQ=255)                                                                                                                                                                                       tttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcc                                                   <  1:154953‑M2/229‑187 (MQ=255)                                                                                                                                                                                           cccTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggcc                         <  1:203092‑M2/251‑213 (MQ=255)                                                                                                                                                                                                  ccTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccctc                  <  2:226646‑M2/251‑220 (MQ=255)                                                                                                                                                                                                                acaGCGTGTGACAACGTGggtaatgactccaacttattgatagtgtttgatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccatgtggtgcctcagattcaggttatggcgctcaattcgctgcttatatcgcttgctgattacttgcatctttcccttcaggcgggattcatacagcggccagccattcgtaatccatatca    >  2:249232‑M2/1‑18 (MQ=255)                                                                                                                                                                                                                  aGCTTGTGACAACGTGggtaatgacgccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgcgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcctacagcggccagccatccgtcatccatctcacc  <  2:197902‑M2/251‑236 (MQ=255)                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                            GGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTCCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCTTATGCCAATAGTCATCCAGGATTGTGGAAAGTCGGGATGATGGCCGGTGCTCATGCGGCAAGCTGGTTTATCAATGGCGGCAAAACACCACTCAAATTTGGCGCGATTAGCGACTGGATGGAAGCAC  >  NC_000913/323226‑323685

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.