New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1907879 =	0 (0.000)	12 (0.430)	12/488	1.1	100%	intergenic (‑288/+382)	yobF/yebO	DUF2527 domain‑containing protein YobF/uncharacterized protein YebO
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

AATTATGGCAAGCCATTTTTAAACATGTCTCGATCAGACGCACAAATCTCGATACGTCTTCCACTTTTTTTGCACACTTATGCAACGGAATACGCGCCGATATATCATTGTGCTTAACCTTGCCAGTTCAGGCAGATACTTAAACTGGCGTATTTTCTAACATAGTTCAATAAGTTCAGTTGTTCCAGGCCAGTGGGAGAAGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCA  >  NC_000913/1907643‑1908061                                                                                                                                                                                                                                             |                                                                                                                                                                                       aaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggcggattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATaa                                                                                                                                                                          >  1:233193‑M1/237‑251 (MQ=255)    aacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATaaaaa                                                                                                                                                                       >  2:123369‑M1/234‑251 (MQ=255)                            ttcacgctggccaacctgtttcgggcggaccaaatgatacgcaagtgggccagatctcactaaaaactggggacaacgccataaatggcgaagaaacggtataaataggctgaatcaaggaatttacgggagaaaaaatcggatcaaacatgaagaaatgaaatgactgagtcagccgagaagactttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATaaa                                                                                                                                                <  1:268883‑M1/41‑1 (MQ=255)                                              tttcgggcggacaaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcacacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAAAGGCTat                                                                                                                             <  2:161198‑M1/60‑1 (MQ=255)                                                                        gtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATcc                                                                                                   >  1:12581‑M1/166‑251 (MQ=255)                                                                          gggagagatctcactaaaaaccggggataacgcctgaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacattaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATcccc                                                                                                 >  2:203342‑M1/164‑251 (MQ=255)                                                                                   ctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGAtt                                                                                        <  1:151433‑M1/97‑1 (MQ=255)                                                                                                          ccttaaatggcgaagaaaccgtctaaataagctgattcaaggcatttacgggagaaaaaatcggcccaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAATCAGTTTACGGCTATTTATTTCCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAAtt                                                                 >  1:278783‑M1/132‑251 (MQ=255)                                                                                                                                    ataggctgattcaagacatttacgggagaaaaaatcggctcaaacattaagaaatgatatgactgagtcagccgagaagaatttctccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCACATAAAACAGTCATTTGACGGCTAGTAATTACCCTAAAGAGATGTGAAGCCCCAAAAGGAGTGTAAATGTAAAATAAGAAAAATTGATGAATGAACAAAAAAATTAagaga                                       >  2:219987‑M1/106‑251 (MQ=255)                                                                                                                                              tcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgtctgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGACTGAGCAAAAAAATCAAGAGAGAAACGTTTc                             <  2:222236‑M1/156‑1 (MQ=255)                                                                                                                                                              agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATAcc             >  1:122061‑M1/80‑251 (MQ=255)                                                                                                                                                                         gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATca  >  2:190314‑M1/69‑251 (MQ=255)                                                                                                                                                                                                                                             |                                                                                                                                                                                       AATTATGGCAAGCCATTTTTAAACATGTCTCGATCAGACGCACAAATCTCGATACGTCTTCCACTTTTTTTGCACACTTATGCAACGGAATACGCGCCGATATATCATTGTGCTTAACCTTGCCAGTTCAGGCAGATACTTAAACTGGCGTATTTTCTAACATAGTTCAATAAGTTCAGTTGTTCCAGGCCAGTGGGAGAAGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCA  >  NC_000913/1907643‑1908061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.