Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 343,442 | G→A | G187R (GGA→AGA) | yahK → | aldehyde reductase, NADPH‑dependent |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 343,442 | 0 | G | A | 81.8% | 74.8 / 0.4 | 33 | G187R (GGA→AGA) | yahK | aldehyde reductase, NADPH‑dependent |
Reads supporting (aligned to +/- strand): ref base G (6/0); new base A (5/22); total (11/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.17e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTACTGTGATCACATGACCGGCACCTATAACTCGCCGACGCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGATTTCATTTTGAATACAGTAGCTGCGCCACATAATCTCGACGATTTTACCACCTTGCTGAAGCGTGATG > NC_000913/343198‑343667 | ctactGTGATCACATGACCGGCACCTATAACTCGCCGACGCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGGCTgggggatt > 2:63084/1‑246 (MQ=255) actGTGATCACATGACCGGCACCTATAACTCGCCGACGCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACata < 1:395031/249‑1 (MQ=255) aTCACATGACCGGCACCTATAACTCGCCGACGCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGGCTGGGACATATGGGGaat > 1:149437/1‑249 (MQ=255) ccgcgcttccgatctgCCGACGCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGccc < 2:57580/236‑1 (MQ=255) gCCGACGCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGGCTGAGACATATGGGGGTTAAGCTGGccccgatcgggagagcac > 1:57580/1‑236 (MQ=255) gACGCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACAtg < 1:123153/251‑1 (MQ=255) gCCGGACGAACCGGGCCCTACTCTGGGCGGCTCCTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCCTGGACATCTTGGGGTTAAACCGGCCCACCCGAgggggggacctttgg > 1:144877/1‑242 (MQ=255) gCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATgtgg < 2:13522/251‑1 (MQ=255) aCCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑a < 2:127884/251‑1 (MQ=255) ggCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGGCTGAGACATATTGGGGTTTAGCCGGGCCCCGCGAGGGGGGCACATTTGGTGGGAttttcccc > 1:68154/1‑246 (MQ=255) gggCGGCTACTCACAACAGTTCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCGGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGGCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCa‑a < 2:239488/251‑1 (MQ=255) gATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAg < 1:117310/251‑1 (MQ=255) aGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTTGGGCCTATTGGGGTTAAACTGGCCCACGCCATGGGGGCACATGTGGTGGCATTTTACC‑CTTCTGAGGCA‑AAACGCGATGCGGCAAAAGACCCTggggccggt > 1:135738/1‑246 (MQ=255) atatGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAg < 2:185919/251‑1 (MQ=255) gCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTaa < 2:149415/249‑1 (MQ=255) tATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGGCTGGGACATATGGGGGTTAAGCTGGCCCCCCCGGTGGGGGGGCATGTGGGGGCATTT‑TCCACATTTTTGGCA‑AAAAACGAAGCGGCAAAAA‑CCCCggggggccgtgaaggttgtaaatcac > 2:175212/1‑230 (MQ=255) aTTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCAc < 2:226671/250‑1 (MQ=255) aTTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCAc < 1:67611/250‑1 (MQ=255) cTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGACATATGGGGGTTAAGCCGGCCCCCGCGGTGGGGGGAAATGTGGGGGGATTT‑ACCCCTTTTGAGGCA‑AAACGCGAAGCGGCAAAAA‑CCCTGGGGGGCGGTGAAGGTGTTTACTCCCGCAAAGCCGGTGAGATggcggg > 1:268762/1‑250 (MQ=255) cggcggTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGGGGTGGCAGTT‑ACCACTGCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCGGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCAt < 1:232732/251‑1 (MQ=255) ggcggTGGCTCCTTTGTTGTGTGCAGGGATCACCCCGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATc < 2:408726/251‑1 (MQ=255) gTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGaa < 2:22357/251‑1 (MQ=255) ggcgccTTTGTTGTGGGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAaga < 2:119376/247‑1 (MQ=255) tgtgtgCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGAttt < 1:59618/250‑1 (MQ=255) gCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGATTTCAtttt < 1:343808/251‑1 (MQ=255) cAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGATTTCATTTTg < 1:253193/251‑1 (MQ=255) gATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGATTTCATTTTGAATa < 1:63084/251‑1 (MQ=255) tCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGGCTGAGACATATGGGGGGTAAGCTGGCCCACGCGATGGGGGCAAATGTGGGGGGATTT‑ACCAATTCTGGGGCA‑AAAAGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGGAGGTGTTAACTCACGCAAAGCCGATGGGATGGCGGCTCATCTGAAAAGTTTTGGTTTCATTTTGAATAc > 1:366600/1‑250 (MQ=255) cacGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGATTTCATTTTGAATACAGTAg < 1:370536/251‑1 (MQ=255) tATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCCGGCCCCCCCGATGGGGGCACATGGGGTGGCATTT‑ACCACTTCTGAGGCA‑AAAAGCGAAGCGGCAAAAA‑ACCTGGGGGCCGATGAAATTGTTAACTCACACAATGCCCATGAGAAGGCGGCTCATCTGCAAAGGTTCTATTTTATTTTGAATACAGTAGCTgc > 1:17965/1‑251 (MQ=255) cgcTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGAAATATGGGGGTTAAGCTGGGCCACGCGATGGGGGCGCATGTGGTGGCCTTT‑ACCCCTTCTGTGGCACAAAC‑CCAAGCGGCAAAAA‑CCCCGGGGGGCGGTGAAGGTGTTAAATCCCGCAATGCCGATGAGATGGGGGCTCCTCTTAAGAGTTTTTATTTTCTTTTGAATACACGAGCTGCGCCCCAt > 2:186632/1‑251 (MQ=255) aCTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGGTTAAGCTGGGCCCCGCGGTGGGGGCACATGTGGGGGGATTT‑ACCACTTCTTAGGGA‑AAAAGCGAAACGGCAAAAA‑CCCCGGGGGGCGATGGAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGGTTTGCTTTTATTTTGAATACAGTAGCTGCGCCACATAATCTcgac > 1:151744/1‑251 (MQ=255) ccgggccgggTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGATTTCATTTTGAATACAGTAGCTGCGCCACATAATCTCGACGATTTTacc < 1:175212/251‑1 (MQ=255) gggCGTGGTCGGCATCGGCGGTCTGAGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGATTTCATTTTGAATACAGTAGCTGCGCCACATAATCTCGACGATTTTACCACCTTGCTGAAGCGTGATg < 2:396291/251‑1 (MQ=255) | CTACTGTGATCACATGACCGGCACCTATAACTCGCCGACGCCGGACGAACCGGGCCATACTCTGGGCGGCTACTCACAACAGATCGTCGTTCATGAGCGATATGTTCTGCGTATTCGTCACCCGCAAGAGCAGCTGGCGGCGGTGGCTCCTTTGTTGTGTGCAGGGATCACCACGTATTCGCCGCTACGTCACTGGCAGGCCGGGCCGGGTAAAAAAGTGGGCGTGGTCGGCATCGGCGGTCTGGGACATATGGGGATTAAGCTGGCCCACGCGATGGGGGCACATGTGGTGGCATTT‑ACCACTTCTGAGGCA‑AAACGCGAAGCGGCAAAAG‑CCCTGGGGGCCGATGAAGTTGTTAACTCACGCAATGCCGATGAGATGGCGGCTCATCTGAAGAGTTTCGATTTCATTTTGAATACAGTAGCTGCGCCACATAATCTCGACGATTTTACCACCTTGCTGAAGCGTGATG > NC_000913/343198‑343667 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |