New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2170611	NA (NA)	23 (0.580)	22/478	0.8	100%	noncoding (441/1258 nt)	IS3	repeat region
	?	NC_000913	2175001 =	0 (0.000)					coding (49/453 nt)	gatA	galactitol‑specific PTS enzyme IIA component

ATACCGCCACGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCTGTGGCCAGGTATCATGAACCACACCTTTGGCGAGCATCTCATTACCGATATGGGTTAAAACTTCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCAAGATTCACCATCATCGTTTCGACGCTATTTTTAATC  >  NC_000913/2174764‑2175251                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                           acaactggcgcagtaaacagcaaaatcagcagacgtcttctgaacgtgaactggagatgtctaccgagattgcacgtctcaaacgccagctggcagaacgggatgaagagctggctatcctccaaaaggccgcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGAc                                                                                                                                                                                                                                                >  1:104945‑M2/238‑250 (MQ=255)     ctggcgcagtaaacagcaaaatcagcagacgtcttctgaacgtgaactggagatgtctaccgagattgcacgtctcaaacgccagctggcagaacgggatgaagagctggctatcctccaaaaggccgcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACaaa                                                                                                                                                                                                                                             >  1:210287‑M2/234‑249 (MQ=255)                              cagacgtcttctgaacgtgatctggagatgtctaccgagattgcacgtctcaaacgccagctggcagaacgggatgaagagctggctatcctccaaaaggccgcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGtt                                                                                                                                                                                                                  <  1:357836‑M2/43‑1 (MQ=255)                                                     ggagatgtctaccgagattgcacgtgtcaaacgccagctggcagaacgggatgaagagcgggctatcctccaaaaggccgcgacagacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagtgcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAGCAGGTTAGTCAGATACCGTCCTGATTcc                                                                                                                                                                                            <  2:207016‑M2/65‑1 (MQ=255)                                                          tgtctaccgagattgcacgtctcaaacgccagctggcagaacgggatgaagagctggctatcctccaaaaggccgcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGcac                                                                                                                                                                                        >  2:19446‑M2/181‑249 (MQ=255)                                                                                caaacgccagctggcagaacgggatgaagagctggctatcctccaaaaggccgcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCa                                                                                                                                                                   <  2:211352‑M2/90‑1 (MQ=255)                                                                                      ccagctggcagaacgggatgaagagctggctatcctccaaaaggccgcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAAcatcat                                                                                                                                                          <  1:183007‑M2/99‑1 (MQ=255)                                                                                                                 ggctagcctccaaaaggccgcgacatacttcgcgaagagcctgaaatgaagtagggctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTGATCCATAATCAGCTGATg                                                                                                                                 <  2:392775‑M2/124‑1 (MQ=255)                                                                                                                           caaaaggccgcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatccggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAACCATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTg                                                                                                                      >  1:37514‑M2/116‑250 (MQ=255)                                                                                                                                    gcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTcccc                                                                                                            <  1:41547‑M2/145‑1 (MQ=255)                                                                                                                                    gcgacatacttcgcgaagcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTcccc                                                                                                            <  1:103411‑M2/145‑1 (MQ=255)                                                                                                                                                    agcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGAt                                                                                                                    <  1:305448‑M2/137‑1 (MQ=255)                                                                                                                                                    agcgcctgaaatgaagtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGAt                                                                                                                    >  2:305448‑M2/91‑227 (MQ=255)                                                                                                                                                                  agtatgtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAg                                                                              <  2:22506‑M2/175‑1 (MQ=255)                                                                                                                                                                       gtctttattgaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACt                                                                         <  2:121415‑M2/180‑1 (MQ=255)                                                                                                                                                                                gaaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATc                                                                 >  1:159402‑M2/63‑250 (MQ=255)                                                                                                                                                                                 aaaaacatcaggctgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCACGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCAt                                                               >  2:117214‑M2/62‑251 (MQ=255)                                                                                                                                                                                              tgagttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATg                                                  >  1:361339‑M2/49‑251 (MQ=255)                                                                                                                                                                                                agttcagcatcaaagcaatgtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTc                                                >  2:99633‑M2/47‑251 (MQ=255)                                                                                                                                                                                                                   gtgccgcgtgctccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTCGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCATCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCAAGATTCAcc                             <  1:97316‑M2/224‑1 (MQ=255)                                                                                                                                                                                                                        gcgtgctccgggtggcccgcagCTCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATAGTCCGTCCTTAGTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGGTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGCCCACGCCTTCAAGCTTCAGcatcat                        <  2:62958‑M2/229‑1 (MQ=255)                                                                                                                                                                                                                               ccgggtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCAAGATTCACCATCATCGttt                   <  2:13715‑M2/234‑1 (MQ=255)                                                                                                                                                                                                                                   gtggcccgcagCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCAAGATTCACCATCATCGTTTCGACGc             >  1:356535‑M2/12‑251 (MQ=255)                                                                                                                                                                                                                                              cGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGTGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCAAGATTCACCATCATCGTTTCGACGCTATTTTTAATc  >  2:284995/1‑251 (MQ=255)                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                           ATACCGCCACGTCGTTATCATCATCCGCTTGCTGAAAATGAACTTTATTTGTTGGCCTTAACAGATAAATGGCTGACGACTTAGCATGAATCGCCTCACAATGCGGTATTGCAATAGCGTGCTGCTCAAGCATTATCCCGGTAGGGAATTCTGCTTCTCTGGCAATTAATGCCTGTGGCCAGGTATCATGAACCACACCTTTGGCGAGCATCTCATTACCGATATGGGTTAAAACTTCGCTACGATCGACAAAAGAAATTCCGCTACGAACAAACAGGTTAGTCATATACCGTCCTTATTCCGCACAGCCGTAGCGATAGGCGCGCAAAACATCATAAATTTTATCCATAATCAGCTGATGCGGTATTGCTGATAATTCCCCGGACTGAATGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCAAGATTCACCATCATCGTTTCGACGCTATTTTTAATC  >  NC_000913/2174764‑2175251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.