Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 4,123,923 | +A | coding (534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,123,923 | 1 | . | A | 100.0% | 122.3 / NA | 34 | Y178? (TAT→TAN) | cytR | DNA‑binding transcriptional repressor CytR |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (10/24); total (10/24) |
GCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAA‑TAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGT > NC_000913/4123678‑4124170 | gcgcCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAGCCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCAATACAGCCAATCCGTTTATGCCCTTGCTCATataaaataa < 2:40006/250‑5 (MQ=255) cgcCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAAtt < 1:5168/251‑1 (MQ=255) ccGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCGGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGTACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTa < 2:344962/251‑1 (MQ=255) gcgcCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGc < 1:151658/251‑1 (MQ=255) gcCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCAt < 2:2513/251‑1 (MQ=255) gcCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCAt < 2:389581/251‑1 (MQ=255) acaTCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATg < 1:355864/251‑1 (MQ=255) caTCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCAGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATgc < 1:36560/251‑1 (MQ=255) gaagaCAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTg < 1:198459/251‑1 (MQ=255) tgtgTAAGATCAAGCCGCTGCTGCAGCGCTTTGCGTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCAGAATGCCGCAGCGACGCAGCGCCTGGACATAGCCTGGCAGGCGGTTGTGACACAGCGGCCTCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAggg < 2:216137/250‑2 (MQ=255) aaGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAAATGTAGG‑Gagctccagctcc > 1:107212/1‑251 (MQ=255) tCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCAc < 1:398920/250‑1 (MQ=255) gAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCggcgg‑c > 1:22279/1‑251 (MQ=255) gCCACGGGCGATGTCTTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCCGATTGT‑CGATATGAACTGt > 1:103280/1‑190 (MQ=255) gCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGt < 2:103280/190‑1 (MQ=255) gATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAAATTTAGG‑CAGCTCCAGCTCCGGTGCC‑AATTCGTTCGCCATCCCCATCGGCCG‑CAGATTACGCTGTTCCTCAATg > 1:100898/1‑251 (MQ=255) tGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AAtt < 2:83067/200‑1 (MQ=255) cAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCa < 1:288798/251‑1 (MQ=255) ggCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGGAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGCTTATGCCCTTGCTCATATAAAATAATTTACTGCATCCAATGCGGCGGGCCGAGTGTTCGTTA‑GAAATGTAGGGAAGCCCCA‑CTCCGGTGCCCAATT‑GTTCGCCCTCACCACTGGCGGGCGAATTAC‑CGCTTCCTCCATTCTGGCATCAAACGGCAGACCTGAACCCac > 2:382111/2‑250 (MQ=255) cGACGCAGCGCCTGAACATAGCCTTGCAGTCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCAGCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCGTGAACCCAGca < 2:327799/251‑1 (MQ=255) aCGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGcaac < 1:237687/251‑1 (MQ=255) cAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCaacaac < 1:7733/251‑1 (MQ=255) gAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATc < 1:185548/251‑1 (MQ=255) tGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTg < 2:323136/250‑1 (MQ=255) ggCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGtgat < 2:113181/251‑1 (MQ=255) cGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGAATACGCTGTTCCTCAATGCTGGCATCAAACGGCCGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGggatg > 2:411640/1‑250 (MQ=255) tCGGTACCGGCTATACAGCCAATCCATTTATGCCCTTGCTCAAATAAAATAATTTACGGCAACAAATGCGGCGGTCAGATTAT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTATTCCTCAATGCTGACATCAAACGACAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTTGTGATGATCAAATCGATAAAGGTTTTTTc < 1:109013/249‑1 (MQ=255) tCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTc < 1:109011/249‑1 (MQ=255) cGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCctg < 1:382111/251‑1 (MQ=255) ccGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGAt < 1:263206/251‑1 (MQ=255) cTATACATCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGAATGG‑CGATATGAACTGTAGG‑CAGCTCCAGATCCGGTGCA‑AATTCGTTTGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCCGCAACAACATGCCATCCATTTGCTTGGTGATGATAAAATCGATAAAGGTTTTTTCCTGCTGTTTTTg > 2:257723/1‑251 (MQ=255) cAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGCTTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCCGCAACAACATGCCATCCATTTTCTTGGTGATGATCAAATCGATAAAAGGTTTTTCCTGCTGATTTTGATgcg > 2:93492/1‑251 (MQ=255) aaTCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATTAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGGTTTCGCTGTTCCTCAATTCTGGCCTCAAACCGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTTCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTTCTGATTTTTATgcgccca > 2:298223/1‑247 (MQ=255) cGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATc < 1:398733/115‑1 (MQ=255) cGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCCCCGGTGCC‑AATTCGTTCGCCATCACCATc > 2:398733/1‑115 (MQ=255) aaaa‑taaTTTACTGCATCAAATGCGGCGGTCAGCTTTT‑CGATATGAACTTTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCCTCGGCGG‑CCGATTCCGCTGTTCCTCCATTCTGGCATCCAACCGCAGCCTTGAACCCCGCAACAACATGCCATCAATTTTCTTGGTGATGATCACATCGATAAAGGTTTTTTCCTGCTGCTTTTGTTGCGCACCGTCGCCCATcctcccccgatatcctc > 2:352760/2‑235 (MQ=255) | GCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAA‑TAATTTACTGCATCAAATGCGGCGGTCAGATTGT‑CGATATGAACTGTAGG‑CAGCTCCAGCTCCGGTGCA‑AATTCGTTCGCCATCACCATCGGCGG‑CAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGT > NC_000913/4123678‑4124170 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |