Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,123,923 +A coding (534/1026 nt) cytR ← DNA‑binding transcriptional repressor CytR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,123,9231.A100.0% 122.3 / NA 34Y178? (TAT→TANcytRDNA‑binding transcriptional repressor CytR
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (10/24);  total (10/24)

GCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGT  >  NC_000913/4123678‑4124170
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                           
gcgcCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAGCCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCAATACAGCCAATCCGTTTATGCCCTTGCTCATataaaataa                                                                                                                                                                                                                                                          <  2:40006/250‑5 (MQ=255)
 cgcCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAAtt                                                                                                                                                                                                                                                        <  1:5168/251‑1 (MQ=255)
   ccGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCGGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGTACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTa                                                                                                                                                                                                                                                      <  2:344962/251‑1 (MQ=255)
       gcgcCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGc                                                                                                                                                                                                                                                  <  1:151658/251‑1 (MQ=255)
         gcCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCAt                                                                                                                                                                                                                                                <  2:2513/251‑1 (MQ=255)
         gcCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCAt                                                                                                                                                                                                                                                <  2:389581/251‑1 (MQ=255)
               acaTCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATg                                                                                                                                                                                                                                          <  1:355864/251‑1 (MQ=255)
                caTCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCAGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATgc                                                                                                                                                                                                                                         <  1:36560/251‑1 (MQ=255)
                             gaagaCAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTg                                                                                                                                                                                                                            <  1:198459/251‑1 (MQ=255)
                                                tgtgTAAGATCAAGCCGCTGCTGCAGCGCTTTGCGTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCAGAATGCCGCAGCGACGCAGCGCCTGGACATAGCCTGGCAGGCGGTTGTGACACAGCGGCCTCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAggg                                                                                                                                                                                                         <  2:216137/250‑2 (MQ=255)
                                                           aaGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAAATGTAGGGagctccagctcc                                                                                                                                                                                            >  1:107212/1‑251 (MQ=255)
                                                                                   tCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCAc                                                                                                                                                                    <  1:398920/250‑1 (MQ=255)
                                                                                            gAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCggcggc                                                                                                                                                         >  1:22279/1‑251 (MQ=255)
                                                                                                        gCCACGGGCGATGTCTTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCCGATTGTCGATATGAACTGt                                                                                                                                                                                                             >  1:103280/1‑190 (MQ=255)
                                                                                                        gCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGt                                                                                                                                                                                                             <  2:103280/190‑1 (MQ=255)
                                                                                                                 gATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAAATTTAGGCAGCTCCAGCTCCGGTGCCAATTCGTTCGCCATCCCCATCGGCCGCAGATTACGCTGTTCCTCAATg                                                                                                                                    >  1:100898/1‑251 (MQ=255)
                                                                                                                        tGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAAtt                                                                                                                                                                                 <  2:83067/200‑1 (MQ=255)
                                                                                                                                             cAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCa                                                                                                        <  1:288798/251‑1 (MQ=255)
                                                                                                                                              ggCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGGAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGCTTATGCCCTTGCTCATATAAAATAATTTACTGCATCCAATGCGGCGGGCCGAGTGTTCGTTAGAAATGTAGGGAAGCCCCACTCCGGTGCCCAATTGTTCGCCCTCACCACTGGCGGGCGAATTACCGCTTCCTCCATTCTGGCATCAAACGGCAGACCTGAACCCac                                                                                                       >  2:382111/2‑250 (MQ=255)
                                                                                                                                                cGACGCAGCGCCTGAACATAGCCTTGCAGTCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCAGCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCGTGAACCCAGca                                                                                                     <  2:327799/251‑1 (MQ=255)
                                                                                                                                                  aCGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGcaac                                                                                                   <  1:237687/251‑1 (MQ=255)
                                                                                                                                                     cAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCaacaac                                                                                                <  1:7733/251‑1 (MQ=255)
                                                                                                                                                             gAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATc                                                                                        <  1:185548/251‑1 (MQ=255)
                                                                                                                                                                        tGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTg                                                                              <  2:323136/250‑1 (MQ=255)
                                                                                                                                                                            ggCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGtgat                                                                         <  2:113181/251‑1 (MQ=255)
                                                                                                                                                                              cGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGAATACGCTGTTCCTCAATGCTGGCATCAAACGGCCGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGggatg                                                                        >  2:411640/1‑250 (MQ=255)
                                                                                                                                                                                                      tCGGTACCGGCTATACAGCCAATCCATTTATGCCCTTGCTCAAATAAAATAATTTACGGCAACAAATGCGGCGGTCAGATTATCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTATTCCTCAATGCTGACATCAAACGACAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTTGTGATGATCAAATCGATAAAGGTTTTTTc                                                 <  1:109013/249‑1 (MQ=255)
                                                                                                                                                                                                      tCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTc                                                 <  1:109011/249‑1 (MQ=255)
                                                                                                                                                                                                       cGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCctg                                              <  1:382111/251‑1 (MQ=255)
                                                                                                                                                                                                            ccGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGAt                                         <  1:263206/251‑1 (MQ=255)
                                                                                                                                                                                                                cTATACATCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGAATGGCGATATGAACTGTAGGCAGCTCCAGATCCGGTGCAAATTCGTTTGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCCGCAACAACATGCCATCCATTTGCTTGGTGATGATAAAATCGATAAAGGTTTTTTCCTGCTGTTTTTg                                     >  2:257723/1‑251 (MQ=255)
                                                                                                                                                                                                                     cAGCCAATCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGCTTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCCGCAACAACATGCCATCCATTTTCTTGGTGATGATCAAATCGATAAAAGGTTTTTCCTGCTGATTTTGATgcg                                >  2:93492/1‑251 (MQ=255)
                                                                                                                                                                                                                          aaTCCGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATTAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGGTTTCGCTGTTCCTCAATTCTGGCCTCAAACCGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTTCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTTCTGATTTTTATgcgccca                            >  2:298223/1‑247 (MQ=255)
                                                                                                                                                                                                                              cGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATc                                                                                                                                                                <  1:398733/115‑1 (MQ=255)
                                                                                                                                                                                                                              cGTTTATGCCCTTGCTCATATAAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCCCCGGTGCCAATTCGTTCGCCATCACCATc                                                                                                                                                                >  2:398733/1‑115 (MQ=255)
                                                                                                                                                                                                                                                  aaaataaTTTACTGCATCAAATGCGGCGGTCAGCTTTTCGATATGAACTTTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCCTCGGCGGCCGATTCCGCTGTTCCTCCATTCTGGCATCCAACCGCAGCCTTGAACCCCGCAACAACATGCCATCAATTTTCTTGGTGATGATCACATCGATAAAGGTTTTTTCCTGCTGCTTTTGTTGCGCACCGTCGCCCATcctcccccgatatcctc  >  2:352760/2‑235 (MQ=255)
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                           
GCGCCGAGCGCCATCACATCGCTATGGCAGAAGACAGCAGTAGGCGGTTGTGGAAGATCAAGCAGCTGCTGCATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGT  >  NC_000913/4123678‑4124170

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: