New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	257908 =	NA (NA)	33 (1.320)	31/492	0.1	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	= 323450	0 (0.000)					coding (1113/1428 nt)	ykgF	putative amino acid dehydrogenase with NAD(P)‑binding domain and ferridoxin‑like domain

CGATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTCCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCTTATGCCAATAGTCATCCAGGATTGTGGAAAGTCGGGATGATGGCCGGTGCTCATGCGGCAAGCTGGTTTATCAATGGCGGCAAAACACCACTCAAATTTGGCGCGATTAGCGACTGGATGGAAGCACGCGATCTTCCTGA  >  NC_000913/323219‑323698                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         ggaTAACGGGCGTTCGGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaactgat                                                                                                                                                                                                                                       >  2:65178‑M2/2‑232 (MQ=255)  gATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGCTATGGCTCTCTTTATCCCGGGCCAATTGGTGCGGGGATTTCTCCGCTACTTGGCGGCTATAAAAATTTTTAAGATTTTCCCTACGCCTGCTCTTTTTTCCCAGCTTGTGACAAAGGGgggaatgactccaacttttt                                                                                                                                                                                                                                      <  1:83664‑M2/251‑21 (MQ=255)                                  aTTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatg                                                                                                                                                                                                      >  2:45766‑M2/1‑199 (MQ=255)                                       gggATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                                                                                                                                 >  1:10719‑M2/1‑194 (MQ=255)                                                        aTTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGGTTTGGGTCTATTTATCCAGGGGCAATTTGTGCGGGGATTTTTCCGCTACTTGGGGGCTATAAAGATTTTAAAGATTTTACCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaaattattgatagggttttatgttcagataatgcccgatgactttgtcatgcagctcccccg                                                                                                                                                                                <  1:197971‑M2/251‑75 (MQ=255)                                                               gCGGGGCTTGTAGGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTGCTACGCTACGTGGCGGCTATAAAGATTTTAAAGATTTACCCTAAGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtggtttatgttcagagaatgcccgatgactttgtcatgcagctgcaccgattttg                                                                                                                                                                          >  1:192470‑M2/1‑170 (MQ=255)                                                                            gAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCACTATTTATCCCGGGACCATTGGTGCGGGGATTTCTCCGCCACTTTGCGGCTGTAAAGATTTTAAAGATTTACCCTAAGCCCGCTCTTTATGCACAGCTTGTGACAACGTGgggaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgac                                                                                                                                                            <  1:160076‑M2/251‑95 (MQ=255)                                                                                                               aTGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagatt                                                                                                                         >  1:46925‑M2/1‑122 (MQ=255)                                                                                                                      tGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggtt                                                                                                                   <  1:35358‑M2/250‑136 (MQ=255)                                                                                                                            tATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgc                                                                                                            <  1:102572‑M2/251‑143 (MQ=255)                                                                                                                                tATCCAGGGCCAATTTGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTTCGCCTTCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcaggtccaccgattttgagaacgacagcgacttccgtcccagccgtggcaggtgctgcctcagattcagcttatgccgctca                                                                                                         >  2:232623‑M2/1‑105 (MQ=255)                                                                                                                                    cAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgccgcagattcaggttatgccgcgcaattcg                                                                                                    >  1:85016‑M2/1‑101 (MQ=255)                                                                                                                                                gTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGTGTTACCCTACGCCTGCTCTTTATTCACAGCTGTTGACAACGTGggtaatgacgccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagtgacttccgtcccagccgtgacaggtgctgcctcatattctggtgaggccgctcaagtcgcttcttatatcg                                                                                        >  2:140030‑M2/1‑89 (MQ=255)                                                                                                                                                       gATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgct                                                                                  >  1:112249‑M2/1‑82 (MQ=255)                                                                                                                                                                  tACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgc                                                                        <  1:9338‑M2/249‑179 (MQ=255)                                                                                                                                                                  tACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgc                                                                        <  1:127275‑M2/249‑179 (MQ=255)                                                                                                                                                                           gcTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttccctt                                                             <  2:1473‑M2/251‑190 (MQ=255)                                                                                                                                                                             tataAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaccttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttc                                                            <  2:109509‑M2/250‑191 (MQ=255)                                                                                                                                                                               taaagattttaaagatttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcagg                                                         <  2:96721‑M2/251‑194 (MQ=255)                                                                                                                                                                                        taaagatttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagcttgccctttaggcgggattc                                                 >  1:69182‑M2/1‑49 (MQ=255)                                                                                                                                                                                          aagatttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttctgctcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcat                                               <  2:229749‑M2/250‑204 (MQ=255)                                                                                                                                                                                           agatttACCCTACGCCTGCTCTTTATGAACAGCTTGTGACAACGTGgctcatgactcaaccttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattccggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatac                                             <  2:250090‑M2/251‑206 (MQ=255)                                                                                                                                                                                            gatttCCCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagggttttatgttcagataatgcccgatgactttgtcatgcagctcccccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgcggattacgtgcagctttcccttcaggcgggattcataca                                            >  2:152394‑M2/1‑45 (MQ=255)                                                                                                                                                                                             atttACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatac                                             <  1:47824‑M2/249‑206 (MQ=255)                                                                                                                                                                                                      aCGCCTGCTCTTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagcc                                  >  1:156593‑M2/1‑35 (MQ=255)                                                                                                                                                                                                             ctctTTATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtc                           <  2:200353‑M2/251‑224 (MQ=255)                                                                                                                                                                                                                 ttATGCACAGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcat                         >  2:83664‑M2/1‑24 (MQ=255)                                                                                                                                                                                                                      cacaGCTTGTGACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatc                  <  2:196661‑M2/251‑233 (MQ=255)                                                                                                                                                                                                                         aGCTTGTGACAACGTGggtaatgactccaacttattgatcgtgttttatgttcagctaatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcacc               <  1:243967‑M2/251‑236 (MQ=255)                                                                                                                                                                                                                             tgtgACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccac             >  1:134150‑M2/1‑12 (MQ=255)                                                                                                                                                                                                                               tgACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgactttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgtc          <  2:81286‑M2/250‑241 (MQ=255)                                                                                                                                                                                                                                gACAACGTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgtca         <  2:153315‑M2/250‑242 (MQ=255)                                                                                                                                                                                                                                      gTGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttcccttcaggcgggattcatacagcggccagccatccgtcatccatatcaccacgtcaaagggtg  <  2:9848‑M2/251‑249 (MQ=255)                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                         CGATAACGGGCGTTCTGAGGTGCTGGCCTCTGAATTTCGGGATGTGCTGCGCTGTATTCGCTGCGGGGCTTGTATGAATACTTGTCCGGCATATCGCCATATTGGCGGTCATGGATATGGCTCTATTTATCCAGGGCCAATTGGTGCGGTGATTTCTCCGCTACTTGGCGGCTATAAAGATTTTAAAGATTTACCCTACGCCTGCTCTTTATGCACAGCTTGTGACAACGTGTGTCCGGTGCGTATTCCGCTGTCAAAACTGATTTTGCGTCATCGTCGGGTGATGGCTGAAAAAGGGATCACCGCAAAAGCAGAGCAACGGGCGATAAAAATGTTCGCTTATGCCAATAGTCATCCAGGATTGTGGAAAGTCGGGATGATGGCCGGTGCTCATGCGGCAAGCTGGTTTATCAATGGCGGCAAAACACCACTCAAATTTGGCGCGATTAGCGACTGGATGGAAGCACGCGATCTTCCTGA  >  NC_000913/323219‑323698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.