New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1907879 =	0 (0.000)	19 (0.760)	18/492	0.5	100%	intergenic (‑288/+382)	yobF/yebO	DUF2527 domain‑containing protein YobF/uncharacterized protein YebO
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

CGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGATCAGACGCACAAATCTCGATACGTCTTCCACTTTTTTTGCACACTTATGCAACGGAATACGCGCCGATATATCATTGTGCTTAACCTTGCCAGTTCAGGCAGATACTTAAACTGGCGTATTTTCTAACATAGTTCAATAAGTTCAGTTGTTCCAGGCCAGTGGGAGAAGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGGGGTAAATATCTTTTTCTGATATCCCGTTA  >  NC_000913/1907639‑1908124                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      gctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGa                                                                                                                                                                                                                                             >  1:209214‑M1/241‑251 (MQ=255)            ataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGtt                                                                                                                                                                                                                                   <  1:28794‑M1/21‑1 (MQ=255)                  aactggcgatgttattcacgctggccaacctgtttcgggcggaccaaattatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctatataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccgtccCTATGCAATGAATAAAAAGTTATATCAc                                                                                                                                                                                                                            >  1:229835‑M1/224‑251 (MQ=255)                                     gctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAAcagtc                                                                                                                                                                                                         <  1:141115‑M1/47‑1 (MQ=255)                                        ggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAAcagtcagt                                                                                                                                                                                                      >  1:212031‑M1/202‑251 (MQ=255)                                                 gtttcgggcggaccaaatgatacgtcagtggtagagatctcactaaaaactggggataactccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATTAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGc                                                                                                                                                                                               >  1:139282‑M1/193‑249 (MQ=255)                                                                   gatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAgaga                                                                                                                                                                           >  1:45999‑M1/175‑251 (MQ=255)                                                                                              aaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagcaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATACAACAGTCAGTTAACGGCTATTAATTACCCTAACGAGAAGTCAATACCCCAAGGGATTGTAAAtt                                                                                                                                                <  1:137872‑M1/104‑1 (MQ=255)                                                                                                 actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTa                                                                                                                                              <  2:20111‑M1/106‑1 (MQ=255)                                                                                                        ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccacgcttattcgcaccttgcATATGCAATGAATAAAAAGTTATATCAATTTTTCTCATAAAACAGTAAGTTAACGGCTATTAATTACACTAAAGAGAAGTCAATCACCAAAGGGATTGTAAATTTAAAATa                                                                                                                                         <  1:176940‑M1/111‑1 (MQ=255)                                                                                                        ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggatcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCACCAAAGGGATTGTAAATTTAAAATa                                                                                                                                         <  1:176934‑M1/111‑1 (MQ=255)                                                                                                                         gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGAGGAATGAGc                                                                                                                     >  1:59042‑M1/121‑251 (MQ=255)                                                                                                                                      aaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCa                                                                                                           >  1:207422‑M1/108‑248 (MQ=255)                                                                                                                                               gattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAAc                                                                                                 >  1:110795‑M1/99‑249 (MQ=255)                                                                                                                                                                                                           tcagccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAAtt                                    <  2:52097‑M1/212‑1 (MQ=255)                                                                                                                                                                                                              gccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTACACATAAAACAGTCAGTTAACGGCTATTAATTAACCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGAAAACATCCTAATAAATTAATg                                >  2:5233‑M1/36‑251 (MQ=255)                                                                                                                                                                                                               ccgagaagaatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATgg                               >  2:44279‑M1/35‑251 (MQ=255)                                                                                                                                                                                                                       aatttccccgcttattcgcaccttccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGGGGTAAat                        <  2:43288‑M1/224‑1 (MQ=255)                                                                                                                                                                                                                                              tccCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGGGGTAAATATCTTTTTCTGATATCCCGTTa  >  1:169054‑M1/4‑249 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                      CGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGATCAGACGCACAAATCTCGATACGTCTTCCACTTTTTTTGCACACTTATGCAACGGAATACGCGCCGATATATCATTGTGCTTAACCTTGCCAGTTCAGGCAGATACTTAAACTGGCGTATTTTCTAACATAGTTCAATAAGTTCAGTTGTTCCAGGCCAGTGGGAGAAGTTATTACATAGTGCGTGCAATATCACATTTTTTGCTATGCAATGAATAAAAAGTTATATCACTTTTTCTCATAAAACAGTCAGTTAACGGCTATTAATTACCCTAAAGAGAAGTCAATCCCCAAAGGGATTGTAAATTTAAAATAAGAAAAATTGATGAATGAGCAAAAAAATCAAGAGAGAAACGTTTCGCTAATAAATAATACCACGCTTAATCACAAATCCGATGTAAACATCCTAATAAATTAATGGGGTAAATATCTTTTTCTGATATCCCGTTA  >  NC_000913/1907639‑1908124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.