| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,428,795 | Δ115,337 bp | IS5‑mediated | lomR–narU | 104 genes lomR, stfR, tfaR, pinR, ynaE, ynaM, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD2, insC2, ydbA, insI2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, azoR, hrpA, ydcF, aldA, cybB, rydC, ydcA, yncP, hokB, mokB, sokB, trg, ydcI, ydcJ, opgD, ydcH, rimL, ydcK, tehA, tehB, ydcL, insQ, ydcO, sutR, rlhA, yncJ, hicA, hicB, ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, ydcD, yncO, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1428795 | 1544131 | 115337 | 13 [0] | [0] 13 | lomR–narU | lomR,stfR,tfaR,pinR,ynaE,ynaM,uspF,ompN,micC,ydbK,ydbJ,hslJ,ldhA,ydbH,ynbE,ydbL,feaR,feaB,tynA,paaZ,paaA,paaB,paaC,paaD,paaE,paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD2,insC2,ydbA,insI2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,ynbD,azoR,hrpA,ydcF,aldA,cybB,rydC,ydcA,yncP,hokB,mokB,sokB,trg,ydcI,ydcJ,opgD,ydcH,rimL,ydcK,tehA,tehB,ydcL,insQ,ydcO,sutR,rlhA,yncJ,hicA,hicB,ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,ydcD,yncO,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1428794 | NA (NA) | 13 (0.670) | 8/278 | 0.7 | 100% | noncoding (1/1196 nt) | IS5 | repeat region |
| ? | NC_000913 | 1544132 = | 0 (0.000) | intergenic (‑72/+626) | narU/yddK | nitrate/nitrite transporter NarU/leucine‑rich repeat domain‑containing protein YddK | |||||
TGCGCTAAATAGCATCCAGACACAGAAGGCAAGAAGTAGACAACTGACTGATATCCAGAGATTTCTTCGAGCAATATGTTTTCCTTTATTTTCCCAGAAGGCCGGATTTTCTGGTTTCCAGTCGCGCAAAAGATAACGACTATTTTTCTCATTTTGCAGTGCCATATTGTTCCTCACATGCACACATTGGTAATGAAAAAAAGACAAAACACGAGGTAAGGCGCAATAGCCAGTTATTAGAATTAAGGATGAATTGGGTGAAGTGCTGATTGAAAGAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGGGGATTAAGTAGCCAGATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGA > NC_000913/1543896‑1544375 | cggatagggccgtcggccattgcccgccttgggataaaacggctcgatgacagcggtcatattctgccatggcagaatctgctccatgcgggagaggaaaatctcttttcgggtctgacggcgcttagtgctgaattcactatcggcgaaggtgagttgatggctcatgatgtccctctgggatgcgctccggatgaatatgatgatctcatatcaggaacttgttcgcaccttccTTAGAATTAAGGatn < 1:50917‑M2/15‑2 (MQ=255) ctcgatgacagcggtcatattctgccatggcagaatctgctccatgcgggagaggaaaatctcttttcgggtctgacggcgcttagtgctgaattcactatcggcgaaggtgagttgatggctcatgatgtccctctgggatgcgctccggatgaatatgatgatctcatatcaggaacttgttcgcaccttccTTAGAATTAAGGATGAATTGGGTGAAGTGCTGATTGAAAGAATAGATAAGAAAGCGt > 1:264980‑M2/195‑251 (MQ=255) aatgacagcggtcatattctgccatggcagaatctgctccatgcgggagaggaaaatctcttttcgggtctgacggcgcttagtgctgaattcactatcggcgaaggtgagttgatggctcatgatgtccctctgggatgcgctccggatgaatatgatgatctcatatcaggaacttgttcgcaccttccTTAGAATTAAGGATGAATTGGGTGAAGTGCTGATTGAAAGAATAGATAAGAAAGCGtaan < 1:128319‑M2/60‑2 (MQ=255) gtcatattctgccatggcagaatctgctccatgcgggcgaggaaaatctcttttcgggtctgacggcgcttagtgctgaattcactatcggcgcaggtgcgttgatggctcatgatgtccctctgggatgcgctccggatgaatatgatgatctcatatcaggaacttgttcgcaccttccTTAGAATTACGGATGAATTGGGTGAAGCGCTGATTGAAAGAATAGATACGAAAGCGTAACCGCGGGGGc > 1:208011‑M2/182‑250 (MQ=255) gaaaatctcttttcgggtctgacggcgcttagtgctgaattcactatcggcgaaggtgcgttgatggctcgtgatgtccctctgggatgcgctcaggatgaatatgatgatctcatatccggcccttgttcgcaccttccTTAGACTTAAGGATGAATTGGGTGACGTGCTGATTGAAAGAATAGATAAGAAAGCGTAACCGAGGGGGCCGAATgggg > 1:456009‑M2/141‑218 (MQ=255) tgacggcgcttagtgctgaattcactatcggcgaaggtgagttgatggctcatgatgtccctctgggatgcgctccggatgaatatgaggatctcatatcaggaatttttccgcaccttctGTAGAATTAAGAATGAATTGCGGGAAGTGCTGATTGAAAGAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGGGGAtt < 1:280994‑M2/81‑1 (MQ=255) ngcttagtgctgaattcactatcggcgaaggtgcgttgatggctcatgctgtccctctgggatgcgctccggctgaatatgctgatctcatatcaggaacttgttcgcaccttccTTAGCATTAAGGATGAATTGGGTGACGTGCTGATTGAAAGAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGGGGATTAAGTAGCCAGATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACgggg > 1:57783‑M2/116‑251 (MQ=255) ttagtgctgaattcactatcggcgaaggtgagttgatggctcatgatgtccctctgggatgcgctccggatgaatatgatgatctcatatcaggaacttgttcgcaccttccTTAGAATGAAGGATGAATTGGGTGAAGTGCGGATTGAAAGAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGTGGATTAAGTAGCCAGATATgtgt < 1:411468‑M2/99‑1 (MQ=255) ctccggatgaatatgatgatctcatatcaggaacttgttcgcaccttccTTAGAATTAAGGATGAATTGGGTGAAGTGCTGATTGAAAGAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGGGGATTAAGTAGCCAGATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTg < 1:290949‑M2/146‑1 (MQ=255) catatcaggaacttgttcgcaccttccTTAGAATTAAGGATGAATTGGGAGAAGTGATGATTGAAAGAATAGATAAGAAAGCGTAACAGCgggg > 1:276989‑M2/28‑94 (MQ=255) caggaacttgttcgcaccttccTTAGAATTAAGGATGAATTGGGTGAAGTGCTGATTGAAAGAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGGGGATTAAGTAGCCAGATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTc < 1:215934‑M2/163‑1 (MQ=255) accttccTTAGAATTAAGGATGAATTGGGTGAAGTGCTGATTGAAAGAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGGGGATTAAGTAGCCAGATATGTGTTACTAAATGTAACTAACAAGCTTACCTGCAAACGGGGTGAATCTTTGAACGGATGTCATGTTGCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTAtcaacaagtccagacactaattctataagtgtctg < 1:259456‑M2/244‑18 (MQ=255) cttccTTCNANNNANNGATGAATTTGGTGAAGTGCTGATTGAAAGAATAGCTAAGAAAGCNTAAACGCGGGGGCCGNATNGGGANTAANTAGCCAGATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGGATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGgnttanatattnncnatattannnacnnnnnnnncnnnnccnnannnt > 2:357827‑M2/6‑219 (MQ=255) | TGCGCTAAATAGCATCCAGACACAGAAGGCAAGAAGTAGACAACTGACTGATATCCAGAGATTTCTTCGAGCAATATGTTTTCCTTTATTTTCCCAGAAGGCCGGATTTTCTGGTTTCCAGTCGCGCAAAAGATAACGACTATTTTTCTCATTTTGCAGTGCCATATTGTTCCTCACATGCACACATTGGTAATGAAAAAAAGACAAAACACGAGGTAAGGCGCAATAGCCAGTTATTAGAATTAAGGATGAATTGGGTGAAGTGCTGATTGAAAGAATAGATAAGAAAGCGTAACCGCGGGGGCAGAATGGGGATTAAGTAGCCAGATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGA > NC_000913/1543896‑1544375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |