| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,633,913 | IS5 (–) +4 bp | coding (292‑295/591 nt) | pinQ → | putative recombinase PinQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1633913 = | 0 (0.000) | 17 (0.890) | 14/276 | 0.2 | 100% | coding (292/591 nt) | pinQ | putative recombinase PinQ |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1633916 | NA (NA) | 20 (1.030) | 16/278 | 0.1 | NA | coding (295/591 nt) | pinQ | putative recombinase PinQ |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
TCGAAAGTGCAGGTTTTAAAATCAAACCTCAGCAAATAATCGAAGAACACATTAGCGGCTCAGCAGCAACCAGTGAGCGTCCTGGTTTTAACCGGTTGCTTGCTCGCCTGAAATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAAT > NC_000913/1633692‑1634080 | gccattaccagccttggagtaaaacggctcggtgacttccaccatgttttgaaatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctggcggcgcttaatgctgaattcactgacggcgaaggtaagttcatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTGGGGGGCATTGACCTGACCAGt < 1:151605‑M1/30‑1 (MQ=255) nttaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctgggctgatggcgcttactgctgaattcactgtcggcgaaggtaagttgctgactcatgatgaaccctgttctatggctccagatgacaaacatgatcccatatcagggacttggtcgcaccttccTTCGCAGTGGGGGTCATtgac < 1:300401‑M1/21‑1 (MQ=255) attaccagccttggggtaaaacggctcgatgtcttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTGGGGGGCATTGACCTGACCAGt > 1:288211‑M1/219‑248 (MQ=255) cagccgtggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctctgttctggtctgacggcgcgtactgctgaagtcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttcgatggctccagatgacaaacatgatcgcagatcatggacttgttcgcaccttccGTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAgg > 1:219373‑M1/214‑251 (MQ=255) ccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTGGGGGGCATTGACCTGACCAg < 1:324245‑M1/29‑1 (MQ=255) ncagaatctgatccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACg < 1:146832‑M1/83‑1 (MQ=255) nnnnnnnnnntcnnnnngcgnttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTGGGGGGCATtgac > 2:300401‑M1/134‑154 (MQ=255) ctgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGaa < 1:410196‑M1/81‑1 (MQ=255) cactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgccaaacatgatctcatatcagggaattgttcgcaacttccTTAGCATTGGGGGGCATTGACCTGCCCAGTCCAACCGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGACTTTGAACgag < 1:434994‑M1/85‑1 (MQ=255) aaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcacctgccTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACctgtgn > 1:58986‑M1/89‑250 (MQ=255) ggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTgggggg > 1:442481‑M1/87‑100 (MQ=255) aagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAAt < 1:172142‑M1/168‑1 (MQ=255) catgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGCATTGGGGTGCATTGACCTGACCAGGCCAACAGGAAAAATGATGATTCAATTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTc > 1:323038‑M1/72‑177 (MQ=255) tatcagggacttgttcgcaccttccTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGTATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCg > 1:225628‑M1/26‑177 (MQ=255) atcagggacttgttcgcaccttccTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCg > 1:201275‑M1/25‑136 (MQ=255) tggactttttcgcgccttccTTAGCATTGGGGGTCATTGACCTGTCCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTca > 1:205397‑M1/21‑83 (MQ=255) cgcaccttccTTAGCAGTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATGTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCggg > 1:88628‑M1/11‑124 (MQ=255) | TCGAAAGTGCAGGTTTTAAAATCAAACCTCAGCAAATAATCGAAGAACACATTAGCGGCTCAGCAGCAACCAGTGAGCGTCCTGGTTTTAACCGGTTGCTTGCTCGCCTGAAATGTGGTGATCAATTGATTGTGACAAAACTGGATCGCCTTGGTTGTAATGCAATGGATATCAGGAAAACAGTGGAACAACTGACCGAAACAGGTATCAGAGTGCATTGCTTAGCATTGGGGGGCATTGACCTGACCAGTCCAACAGGAAAAATGATGATGCAAGTAATTTCAGCAGTCGCTGAATTTGAACGAGACCTTTTACTTGAACGCACTCATTCCGGGATAGTAAGAGCCCGCGGCGCAGGGAAACGTTTTGGTCGACCACCTGTGTTAAAT > NC_000913/1633692‑1634080 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |