| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1978503 = | NA (NA) | 12 (1.470) | 9/332 | 0.0 | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2406787 | 0 (0.000) | intergenic (‑146/‑774) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
| * | ? | NC_000913 | = 1979270 | NA (NA) | 15 (1.830) | 11/334 | 0.0 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | 2406780 = | 0 (0.000) | intergenic (‑139/‑781) | lrhA/alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA | |||||
ATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAACC > NC_000913/2406587‑2407035 | ggtgtaagtgaactgcagttgccatgttttacggcagtgagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCt > 1:39013‑M2/194‑251 (MQ=255) agtgaactgcagttgccatgttttacggcagggagagcagagatagcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatctccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 1:153654‑M2/64‑1 (MQ=255) gATCGAGGTAGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCCGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttcttgatagtgttttatgttcagataatgcccgatgactttgtcat < 1:127803‑M2/251‑63 (MQ=255) atgttaATTATCGGACGATTTGCACTTATCATATATGATCACTTACTGGCGGCTCATGCTGAGCTGGTTCATGCTGTGCACACACACAAAAGCAATTCCATTTGTAATGTGCCTCCCTGGCCGTTTCATCCGGAACCCGGACGAAAGTAACAATGCATATGTGTTGCACTAAAAAAGCggtaatgactccaacttattgctagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc < 1:154434‑M2/249‑74 (MQ=255) cggcagtgagagcagagatagcgctgatgtccggcggtgcttttgcagttacgcaccaccccgtcagtagctgaacaggggggacggctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactacatcagtaatttggcagcatcaccAAAAAAGCGACTCACCTTGTTCCGTTATCATGCCTGAAGTAGATCACAGACTATATCTTCAGGGATCGCATATCTATTAAGTTactcac > 1:58‑M2/163‑251 (MQ=255) gtacgATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac < 1:136897‑M2/249‑86 (MQ=255) gcgctgatgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACatn < 1:20420‑M2/109‑2 (MQ=255) tACTGGCGGCTCATACTGAGCTGGTTAATGCTGTCCACACACAAACAAGCAATTCCAGTTGTAATGTGCCGCTCTGGCAGTTTCATCCGGAACCCGGACGAAAGGAAAAATGCAGATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgattgtgtcatgcagctccacctagtgtttgaacgacagcgacttccgtcccagccgtgccagg > 1:154171‑M2/1‑135 (MQ=255) aGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGTACGAAAGTAAAAATGCATATGAGTTTCACTAAAAAAGCggtaatgactccaacttatggatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgactcccgtcccagccgtgccaggtgctgcctcagattcaggt > 1:75127‑M2/1‑117 (MQ=255) ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGGTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTtcn < 1:19770‑M2/147‑2 (MQ=255) tgtgCACACACAAACAAGCAATTCCATTTGTAATGTGCATCCCTGGCAGTTTCATACGGAACCCGGAAGAAAGTAAAAATGCATATGAGTTGAACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaat < 1:108262‑M2/251‑148 (MQ=255) gctgaacaggagggacagctgataganacagaanncantggagcacctcaaaaacacnatnnnannntncatcantannttggcagcancaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGNATATATCTTNNGGGATCGCATATCTATTAAGTNACTNNCNNTNTTCNAt > 2:35655‑M2/94‑192 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTGGTATAAATGTAAATGTGAGt < 1:35655‑M2/138‑1 (MQ=255) ctgaacaggagggacagctgatagaaacagaagccactggagcacctcaacaacaccatcatacactaaatcagtaagttggcagcatcaccAACAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTgc > 1:147445‑M2/93‑249 (MQ=255) cacacacaAACAAGCAATTCCATTTGTACTGTGACTCTTTCGCAGTTTCCTCCGCAACCCGGACGAAAGTAAACATGCATCTGCAATGCACTAAAAAAGc > 1:78419/1‑100 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCAc < 1:61787‑M2/149‑1 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcactc > 1:63227‑M2/72‑162 (MQ=255) tGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgctgattacgtgcagctttc > 1:133302‑M2/1‑61 (MQ=255) gagcacctcaaaaacaccatcatacactaaatcagtaagttggccgcatcaccAAAAAAGCGACTCATATTGGTCCGTTATAATGCCTGAAGTAGATCACAGAATATAGCTTCAGGGATCCCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTAACAACAGCAAtgt < 1:73988‑M2/198‑2 (MQ=255) gCAGTTTCATCCGGAACCCGGACGAGAGTAAAACTGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggggctgcctcagattcaggttatg < 1:128774‑M2/197‑139 (MQ=255) ntttcATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccg < 1:104737‑M2/163‑109 (MQ=255) ncaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACt > 1:15565‑M2/47‑58 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTc > 1:59082‑M2/46‑191 (MQ=255) aNCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgcc < 1:131676‑M2/184‑141 (MQ=255) nnganNNNNAAANTGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacatccgtcccagccg > 2:104737‑M2/3‑38 (MQ=255) cactaaatcagtaagttggcagcatcnccAAAANNGCNACTCACATTGTTCCGTTATNATNNNTNNNGNCGATCNCANNATATATCTTNAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGNGTTTGTATANNTGTAAATGTGAGTCCTTGTTCNACTNNcnngnagcncc > 2:37374‑M2/30‑189 (MQ=255) gAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCggtaatgactccaacttcttgatcgtgttttatgttccgataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcctggtgctgcctcagattcaggttatgccgctcaattcgctgcgtatatcgcttgcagattacgtgcagctttcacttcaggcgggattcatacagcggccagc < 1:167717‑M2/251‑216 (MQ=255) tggcagcatcaccAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCGTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATTTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCAGCAAGAGCAGGGATCCGTCATTTATCCGa < 1:37374‑M2/237‑1 (MQ=255) aGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAAcc < 1:6160/251‑1 (MQ=255) | ATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAATGCTGTGCACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATGACATGCGCGTGTTTGTATAAATGTAAATGTGAGTCCTTGTTCCACTCTCGTGCAGCATCGCTGGTCATACGCGAACACGTACCAACAGCAATGGTGAGGCGGCATCAAGAGCAGGGATCCGTCATTTATCCGAGCATTTTACCCCAAAAACC > NC_000913/2406587‑2407035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |