| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4123923 = | 0 (0.000) | 6 (0.730) | 5/332 | 0.3 | 100% | coding (534/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 4123927 | 0 (0.000) | 8 (0.980) | 7/332 | 0.1 | 100% | coding (530/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | = 4499511 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
ATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTG > NC_000913/4123750‑4124171 | gttcaaagctctgctgaacaattgcgatcttttcctgggtggtacgccgtctgcgtttctccggccctaagacatcaatcagctgttctccaatgactagtctaaaaactagtattaatactatcacttatttaagtgatattggttggctggagatgcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTTAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAAttcgtt > 1:80864‑M1/174‑251 (MQ=255) cGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCAGTAGTGACACAGCGGCATCGCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatgtgtccctataatgccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccg < 1:170187‑M1/250‑75 (MQ=255) nctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATc < 1:103720‑M1/85‑1 (MQ=255) gCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttcaagacatctgttatcacttaacccattacaagccagctgccgcagatattcccgtggcg > 1:163621‑M1/1‑170 (MQ=255) gctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctcaggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCCGATTGTCGATATGAACTGTAGGCAGCTCCCGCTCCGGTGCAAATTCGTTCGCCATCACCAt < 1:71170‑M1/90‑1 (MQ=255) gcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCggcggc < 1:4479‑M1/97‑1 (MQ=255) cGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTCGTGACACATCGGCACCTCTTCGGGCCCGACTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgtccctatattgccagacatttgttatcacttattccattgcaatcccgctgccccatatattcccgtggcgagcgataacccagcgcactatgcggataccattcgttataatgctcgaccgcctctgcaag < 1:118167‑M1/251‑141 (MQ=255) gcgcCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgc < 1:168380‑M1/251‑153 (MQ=255) nggcTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctatctttacagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacc > 1:18035‑M1/2‑45 (MQ=255) ataCAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATtggatttgcccctctatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacg > 1:79593‑M1/1‑40 (MQ=255) ccGTTTATGCCCTTTCTCATATAAAGAATtggatttgcccctatatttccagacatcttttatcacttaacccattacaagcccgcttccgcagatattcccgtggctatctagaacccagctcactatgcggatgccattcgttataatgctcgaacttctctgcaaggt < 1:113436‑M1/171‑143 (MQ=255) ttcagggggccagtctaATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCTTCAATGCTGGc > 1:61407‑M1/18‑140 (MQ=255) ataaataaTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttcacgaagctctctgctattccgttactctccggac < 1:73777‑M1/250‑242 (MQ=255) taATAATTTACTGCATCAAATGCGGCGGTCAGATTGGCGATATGAACTGTAGCCAGCTCCCCCTCAGGTGCAAATTTGTTCGCCATCACCATCCGCGGCAGATTAAGCTGTTCCTAAATGCTGGCATCAAACGGCCGCCTTGAACCCAGCAACAACATGCCCTCAATTTGCTTGGTGATGATCAAATCGCTAAAGGTTTTTTCCTGCTGATTTTGATGCGCACCGTCGCCAATCAGCCCCAGATATCCGTg < 1:90154‑M1/249‑1 (MQ=255) | ATCGCTTTGCTTCCGGCTTCGAAGGTGAAGTCGCCACGGGCGATGTATTGCGGATCAACCATAATGCCGCAGCGACGCAGCGCCTGAACATAGCCTTGCAGGCGGTAGTGACACAGCGGCATCTCTTCGGGACCGGCTATACAGCCAATCCGTTTATGCCCTTGCTCATATAAATAATTTACTGCATCAAATGCGGCGGTCAGATTGTCGATATGAACTGTAGGCAGCTCCAGCTCCGGTGCAAATTCGTTCGCCATCACCATCGGCGGCAGATTACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTG > NC_000913/4123750‑4124171 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |