| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 9 (1.100) | 8/332 | 0.1 | 100% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 1105376 = | 0 (0.000) | intergenic (+83/‑38) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA | |||||
| * | ? | NC_000913 | = 1105380 | 0 (0.000) | 10 (1.220) | 10/334 | 0.0 | 100% | intergenic (+87/‑34) | csgC/ymdA | curlin chaperone/uncharacterized protein YmdA |
| ? | NC_000913 | 1467910 = | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
GAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTA > NC_000913/1105135‑1105626 | acgccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatctcttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAagn < 1:16605‑M2/10‑2 (MQ=255) ccagagaaataactggctggctgctacaccatgttgccgggcaacgagggagaccgtcatccccggttcaaagctctgctgaacaattgcgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcaggttgccagtcaaACCCTCAAGGATg < 1:45076‑M2/13‑1 (MQ=255) atccccggttcaaagctctgctgaacaatttcgatcttttcctgtgtggtccgcagtatgagtttctccggcactaaaacatcaatcatctgctctccaatgcctagtctaaaaactagtattaaaactatcacttattttagtgatattggttgtctggagtttcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGGTCAGACCTTTTTTAAACTCCCTTATGCTc > 1:78033‑M2/181‑251 (MQ=255) gctgaacaattgcgaccttttcctgtgagctacgcggtctgcgtttctccggccctaagacatcactcatctgttctccaatgactagtctaacaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCtt > 1:139667‑M2/162‑251 (MQ=255) aattgcgatcttttcctgtgtggtacgccgtctgcgttgctccggccctaagacatcaatcatctgttctccaattactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcaggtggctagtctaACCCTCAAGGATTACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTGTTAAACTCTCGTATGCTCGTCAGTTTGTTTTTTCCTTTTATTGc < 1:114578‑M2/97‑1 (MQ=255) gttACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcactgaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgc < 1:23746‑M1/251‑96 (MQ=255) cgatcttttcctgtgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTg > 1:7140‑M2/150‑251 (MQ=255) tCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcaagcgataacccagcgcactatgcg < 1:53765‑M1/250‑104 (MQ=255) cAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgc < 1:118368‑M1/250‑150 (MQ=255) aaTTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACATGAAAGTATGGATAACACAAACCTtggatttgcccctatatttccagacatctgttatcacttaacccattccaagcccgatgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccg > 1:156337‑M1/1‑89 (MQ=255) tatCGAGCATAAGATGAATCTGGAGAGCATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAAACCTtggatttgcccctatatttcc > 1:69807‑M1/1‑77 (MQ=255) atcacttatttaagtgatattggttgtctggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGCCCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAGGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGaa < 1:90930‑M2/199‑1 (MQ=255) gTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTgggatttgcccctatatttccagacatctgttagcacttaacccattacaagcccgcggccgcagatattccggtggcgagcgataacccagcgcactatgcggatg < 1:62902‑M1/153‑108 (MQ=255) ctgctgCGAATCAGCCAACCTGAAAGTATGGATAACACACCCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatcttccagtggcgaacgataaaccagcgcactatgcggttgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatactgatgtagtcacgctttatcgttttc > 1:173051‑M1/1‑44 (MQ=255) tgcGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTtggatttgccccgatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacgcctctgcaag < 1:69465‑M1/180‑141 (MQ=255) ccAACCTGAAAGTATGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcacactatgcggatgccattcgttataatgctcgaacgcctctgcaaggttctttgctgccgttaacccgtctggtttgggcatgatac > 1:128608‑M1/1‑30 (MQ=255) ggagattcagggggccagtctaACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCggg < 1:74269‑M2/226‑1 (MQ=255) aTGGATAACACAACCCTtggatttgcccctatatttccagacatctgttatcacgtaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctctaacgcctctgcaaggttgtttgctgccgttaacccgtcttgtggggtcatgatacggatgtagtcacgcgttatcgttttcacgaagctctctgctattccgttactc < 1:162472‑M1/251‑235 (MQ=255) ggccagtctaACCCTCAAGGATGACTAATCATTGCGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTcc > 1:141765‑M2/11‑249 (MQ=255) cccTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTa > 1:21558/1‑250 (MQ=255) cccTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTAAGACCTTTTTTACACTCTCTTATGCTCGCCAGTTTGGTTTTTCTTTTTATTGCCATTGCTGGAAGAACCGTGCAAGGGGGCGTGATCCATTTTTATAGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAAATGCCCACAGAATGGTTCTATTCCGGGCAAACACTACTACAGCAAAACGTTa > 1:21562/1‑250 (MQ=255) | GAAAAGACCCTTTCATTGCCTGCTAATCAACCCATTGCTTTGACGAAGTTGAGTTTAAATATTTCCCCGGACGATCGGGTGAAAATAGTTGTTACTGTTTCTGATGGACAGTCACTTCATTTATCACAACAATGGCCGCCCTCTTCAGAAAAGTCTTAATTTGTTGAAATATCGAGCATAAGATGAATCTGGAGAGAATGGTCTGCTGCGAATCAGCCAACCTGAAAGTATGGATAACACAACCCTCAAGGATGACTAATCATTGAGGAAATAGAATAAATGTTCAGACCTTTTTTAAACTCTCTTATGCTCGGCAGTTTGTTTTTTCCTTTTATTGCCATTGCTGGAAGCACCGTGCAAGGGGGCGTGATCCATTTTTATGGCCAAATTGTGGAACCGGCATGTGACGTCAGCACCCAGTCATCACCCGTAGAAATGAACTGCCCACAGAATGGTTCTATTCCGGGCAAAACCTACTCCAGCAAAGCGTTA > NC_000913/1105135‑1105626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |