| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 57,276 | IS2 (+) +5 bp | intergenic (‑167/‑84) | lptD ← / → djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 57276 = | 0 (0.000) | 11 (1.340) | 9/334 | 0.1 | 100% | intergenic (‑167/‑88) | lptD/djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 57280 | 0 (0.000) | 11 (1.340) | 8/334 | 0.1 | 100% | intergenic (‑171/‑84) | lptD/djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| ? | NC_000913 | 381260 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
TGCCAGTCCCTGTTGACTATAAAGGGCGGTGGCAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAACCAGCGTGAGCGTCAGGCGCTGTTT > NC_000913/57038‑57525 | ggcCAGTACCTGTTGACTATAAAGGGCGGTGGCAATCATGGGGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTGGATTGTATTGGCCCAGCAGCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCGACGCTAGTGTTAAGCCGGTCCGAATATCGTCAGTGGTGGTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactgg < 1:86730‑M1/250‑9 (MQ=255) aTTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctc < 1:148554‑M1/186‑22 (MQ=255) gcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatcgtgcgctgggttatcgctagacccgggaatatctgcggcagcgggcttgtaatgggttaagtgataaaagatgtctggacatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAg < 1:115383‑M1/33‑1 (MQ=255) gcaaagaaccttgcagaggcgttcgagcattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagngggnttgtnatnggtgaagtgataacanatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCNNGNNNANGGTAAAAg > 2:115383‑M1/150‑182 (MQ=255) ttGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattgga < 1:2058‑M1/224‑86 (MQ=255) gTCAGAGACTAACGTACTCGTCATCTCTACGATAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggc > 1:143453‑M1/1‑123 (MQ=255) aCTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTAAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaagctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccan < 1:15102‑M1/251‑136 (MQ=255) ggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGTAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCATTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGggcggc > 1:84877‑M1/110‑251 (MQ=255) gTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGGATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaa > 1:4708‑M1/1‑104 (MQ=255) agtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACGATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGAAGATAGCGCTGATATCCGTGTGTCGTGTTGGTGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTgggg > 1:166737‑M1/99‑251 (MQ=255) cATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggcccccttaatcgccatacaaccaatatcacttaaataagtgataggcttaatactagttgttagactagtcattggagaacagatgattgatgtcttagggtcggagaaacgcagacggcgtaccacacaggaaaagatc < 1:161864‑M1/250‑149 (MQ=255) ncgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGt < 1:42169‑M1/156‑1 (MQ=255) naatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaattcaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTCTATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGAGGCGGCTTTTGGGGCGTAGTGTTAGGCCCGTTATTTGGcc < 1:105373‑M1/179‑1 (MQ=255) cggcagcgggcttntaatgggttaagtgataacagatgtctggaantntaggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCNCCTTTAGATTNTGGNNGATANCNCNGATATCCGTGTGTCGATTTGGGGAATATANGCAGTATTGGGGAAAAATCATTGNNGTNNNCGNNGCCtt > 2:124456‑M1/63‑191 (MQ=255) cggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaACACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCtt < 1:124456‑M1/129‑1 (MQ=255) ggCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttg < 1:154551‑M1/251‑198 (MQ=255) gatgtctggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAACGCACCTTTATATTGTGGGAGATCGCCCTGATCTCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATCAAGCCCGTAGCCGTAAAATGGCGTGGTTCGcc < 1:65662‑M1/223‑1 (MQ=255) ggaaatataggggcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGTAATATATGCAGTATTTGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTATGCCTGTTAATTGGCCATATGTTGGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAAcc > 1:91752‑M1/22‑248 (MQ=255) cAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagtt > 1:23487‑M1/1‑23 (MQ=255) cAAATTATAGGCGATGTCCCACAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgaaccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagcaagtt > 1:12449‑M1/1‑23 (MQ=255) gcaaatccaCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGCTAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGTTTCGCCAACCAGCGTGAGCGTCAgg < 1:61435‑M1/242‑1 (MQ=255) nccaCAtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaagatcgcaattgttcagcagagctttgacccggggatgacggtctccctcgttgcccggcaacatggtgtagcagccagccagttatttctctggcgtaagc > 1:31739‑M1/2‑6 (MQ=255) | TGCCAGTCCCTGTTGACTATAAAGGGCGGTGGCAATCATGGTGGCCAGGAGAGTGGGGATACGTTTTTTCATACGTTGATTTTATTGTTCCATCATCGGTAACGTTGCGCGTGACAAACGGTCAGAGACTAACGTACTCGTCATCTCTACGCTAGTGTTAATCCTGTCCGAATAGCGTCAGTGGTGTTAGGCACGGCATTGAATGACAGGTATGATAATGCAAATTATAGGCGATGTCCCACAATTGACCGCAGCCGGAAAACGGTAAAAGCACCTTTATATTGTGGGAGATAGCCCTGATATCCGTGTGTCGATTTGGGGAATATATGCAGTATTGGGGAAAAATCATTGGCGTGGCCGTGGCCTTACTGATGGGCGGCGGCTTTTGGGGCGTAGTGTTAGGCCTGTTAATTGGCCATATGTTTGATAAAGCCCGTAGCCGTAAAATGGCGTGGTTCGCCAACCAGCGTGAGCGTCAGGCGCTGTTT > NC_000913/57038‑57525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |