| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,758,146 | G→A | F572F (TTC→TTT) | selB ← | selenocysteyl‑tRNA‑specific translation elongation factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,758,146 | 0 | G | A | 94.4% | 45.8 / ‑3.5 | 18 | F572F (TTC→TTT) | selB | selenocysteyl‑tRNA‑specific translation elongation factor |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (8/9); total (8/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.30e-01 | |||||||||||
AATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTTTGTATTAATTTATTTTAAAACTTAATTAATCATTTCCTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGGAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGGCAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGCTCTGCTTTTTGCCAGATGGCCTGCTGC > NC_000913/3757917‑3758392 | aaTCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTTTGTATTAATTTATTTTAAAACTTAATTAATCATTTCCTTATTGTTCCGGAAATAATAATGCTTCGCGCAATAAATGAGCATTTCCACTACGACGCTTAAAGCTTATGCGTTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTATGCCTAAGCGATCGCAAAAATCCGCCGCGCAGGTTGaa < 1:162796/251‑1 (MQ=255) cTAATAAAACGCACATTGTACTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTTTGTATTAATTTATTTTACAACTTAATTAATCATTTCCTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTACGCGATCGCGAAAATcc > 1:100399/1‑233 (MQ=255) aataaAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTTTGTATTAATTTATTTTAAAACTTAATTAATCATTTCCTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCTCCGCGCAGGTTGaan < 1:82796/247‑2 (MQ=255) aaTTCATAAGAATTTTGTATTAATTTATTTTAAAACTTAATTAATCATTTCCTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTACACGACGACGAGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATc > 1:308212/1‑251 (MQ=255) cTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGGAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATcgcn < 1:80162/175‑2 (MQ=255) gAAATAAGAATGCGGCGCGCAATAAATGATCATTTCCACTACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCTAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAACCCGCCGCGCAGGTTGAACCACACTCCTGATCGCGATCGCGGATCATATGGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTTCGCCGCCTgg < 1:77023/251‑1 (MQ=255) cgcAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTNATCNNNNNcgnnnnnnnnnn > 2:204471/1‑144 (MQ=255) cgcAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAggn < 1:204471/247‑2 (MQ=255) cgacgCGTAAAGCCAATGCGGTCAAAATATGCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACGCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGtc < 1:246555/249‑1 (MQ=255) cccgCCACTGCGGGCAACATATTCCAGAATCTGAATTGCCAGCTGTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGNCAANNNNNTc > 2:192844/4‑144 (MQ=255) aaaGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATAGTGACAAACTCGACAATCCTATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTGGCTGCGCCGTCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGcc < 1:159835/250‑1 (MQ=255) ccAGANTCTGANTNNCCAGCTTTCGGCCTACGCCNAAGCGATCGCGAAAANCCGCNGCGCANGTNgn > 2:127281/1‑66 (MQ=255) nnaTTGCNAGCTTTCGGCCNACGCCTAAGCGATCGCGAAAATCCGCCGNGCAGGTTGAAc < 2:54064/58‑1 (MQ=255) gAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTTCCAGGTCACGCACCCACCACGGTTCGTCACCAAAc < 1:127281/251‑1 (MQ=255) gAATTGACAGCTTTCGGCCTACGCCTAAGCGATCGCGAAAATCCGCCGCGCAGGTTGAAc > 1:54064/1‑60 (MQ=255) gCGATCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAg > 1:155346/1‑192 (MQ=255) aTCGCGAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGACAATCCGAGCGTTACGGGAATAACGATCTTTAACGATCGCGGTAATTATTCCGTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTg < 1:143657/162‑1 (MQ=255) cgcgAAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGACAAACTCGCCAATCCGATCGTTACGGTCATAACGATATTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGCTCTGCTTTTTGCCAGATGGCCtgctgc > 1:101488/1‑251 (MQ=255) gAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGCTCGCGGATCATATTGGCAAAc > 1:184995/1‑61 (MQ=255) | AATCTAATAAAAAGCACATTGTATTCATTAAACAATGTGCTTTTTTTAAATTCATAAGAATTTTGTATTAATTTATTTTAAAACTTAATTAATCATTTCCTTATTTTTCCGGAAATAATAATGCGTCGCGCAATAAATGATCATTTCCACGACGACGCGTAAAGCCAATGCGGTCAAAATATTCCAGAATCTGAATTGCCAGCTTTCGGCCTACGCCTAAGCGATCGCGGAAATCCGCCGCGCAGGTTGAACCACACTCCTGATCGAGATCGCGGATCATATTGGCAAACTCGACAATCCGATCGTTACGGTAATAACGATCTTTAACGATCGCGGTAATTATTCCTTGCTGCGCCGCCTGGCGTAGAGTCAGGCGCATTGCCTGCTCGTCGGTTCCCGTCTCTTTTGCCAGGTCACGCACCCACCACGGTTCGTCACCAAACAGTGGCTCTGCTTTTTGCCAGATGGCCTGCTGC > NC_000913/3757917‑3758392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |