| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,733,520 | G→A | A440A (GCG→GCA) | xylG → | xylose ABC transporter ATP binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,733,520 | 0 | G | A | 85.2% | 54.8 / 5.0 | 28 | A440A (GCG→GCA) | xylG | xylose ABC transporter ATP binding subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/3); new base A (12/11); total (14/14) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.94e-01 | |||||||||||
GCACTCAATAAATTTACCGGTGGCATTAGCCAGCTTGATGACGCGGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCG > NC_000913/3733293‑3733768 | ncACTCAATAAATTTACCGGTGGCATTAGCCAGCTTGATGACGCGGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAaattaat > 1:202216/2‑251 (MQ=255) aaTTTACCGGTGGCATTAGCCAGCTTGATGACGCGGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTc < 1:20211/251‑1 (MQ=255) ntCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGCCGTTTGAGCGGAGGCAATCAGCACAAAGCGATCCTCGCTAGCTGTCTGTTCATTACCCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGAATCGATATTGGCGCCaaa > 1:57808/2‑150 (MQ=255) tAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTg < 1:274752/250‑1 (MQ=255) tcgtcCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCTACCAGGGGTATCGATATTGGCGCAANATann > 2:194934/1‑137 (MQ=255) accGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGAtn < 1:80669/225‑2 (MQ=255) tATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCTTCGCTCGCTGTCTGCTCCTTAACCCGCGAATTCTCATTCTTGATGAACCCACCAGGGGAATCGCTATTTGCGCACAATAAGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTCTTg > 1:175206/1‑173 (MQ=255) tttGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTGGATGAACCCACCAGGGGTAGCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGc < 1:262727/202‑1 (MQ=255) ggcggcAATCAGCAAAAAGCGATCCTAGCTCGCTGTCTGTTCCTTAACCCGCGCATTCTAATTCTTGATGAACCCACCAGGGGCATCGATATTGGCGCAAACTACGAGATCTACaaa > 1:236926/1‑117 (MQ=255) ggcggcAATCAGCAAAAAGCGANCCTCGCTCGCNGTCNNGTATNTNANCCGCGCAGGCGCATTCTTGATGAACCCACNAGGGGTATCGATATTGGCGCAAANNACNNNAGNNACaaa < 2:236926/117‑1 (MQ=255) gcAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGAATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTg > 1:129596/1‑203 (MQ=255) aannnNNGATNCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTg < 2:202216/144‑1 (MQ=255) ctcgctGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTGATTGTCATCTCTTCCTAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAg < 1:171124/192‑1 (MQ=255) cgctGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGAGAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCgn < 1:67322/251‑2 (MQ=255) ggtgtctgtTACTTAACCCGCGCATTNTCATTCNNGANGAACCCACCAGGGGAATCGNTANNNGNNNANAATACNAGNNCTCCAAATTNATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTNCCTGAAGTGNNCGGCCTTAGCGATCGTGTACTNGTGNNGNNTNCAgng > 2:77353/3‑191 (MQ=255) nccGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAAcatc > 1:95221/2‑251 (MQ=255) gcATTCTCATTCTTGATGAACCTACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGtn < 1:194934/251‑2 (MQ=255) cattctcattctTGATGAACCCACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCg > 1:89188/1‑251 (MQ=255) atgaACCCACCAGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTc < 1:77353/251‑1 (MQ=255) cccACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATGGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGaan < 1:29834/251‑2 (MQ=255) ccaccaGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGCACATCATGTc > 1:242023/1‑230 (MQ=255) accaGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTAGGCCTTAGCGATCGTGTACt > 1:228177/1‑131 (MQ=255) accaGGGGTATCGATATTGGCGCAAAATACGAGATCTACAAANTAANTAACNAANTCGTCCAGCAGGGTANTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCNNANNNANCGTGTACt < 2:228177/131‑1 (MQ=255) ggTATCGATATTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAAc > 1:176427/1‑214 (MQ=255) atTGGNGCAAANTNNGAGATCTACACATTAATTANCCAACTCGTCCAGCANGGTANTGCCGNTAntn > 2:136506/1‑66 (MQ=255) atTGGCGCAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGt < 1:136506/92‑1 (MQ=255) gcgcAAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCg > 1:102074/1‑57 (MQ=255) gcgcAAAATACGAGATCTACAAATTAATTAACCAACTCGGCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCTTGTGCTGGTGATGCATGAAGGGAAACTAAAAGCCATCCTGATAAATCATATCCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGATGAGTGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATc < 1:240103/251‑1 (MQ=255) gcgAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCg > 1:87172/1‑251 (MQ=255) | GCACTCAATAAATTTACCGGTGGCATTAGCCAGCTTGATGACGCGGCAGAGCAAAAATGTATTCTGGAATCAATCCAGCAACTCAAAGTTAAAACGTCGTCCCCCGACCTTGCTATTGGACGTTTGAGCGGCGGCAATCAGCAAAAAGCGATCCTCGCTCGCTGTCTGTTACTTAACCCGCGCATTCTCATTCTTGATGAACCCACCAGGGGTATCGATATTGGCGCGAAATACGAGATCTACAAATTAATTAACCAACTCGTCCAGCAGGGTATTGCCGTTATTGTCATCTCTTCCGAATTACCTGAAGTGCTCGGCCTTAGCGATCGTGTACTGGTGATGCATGAAGGGAAACTAAAAGCCAACCTGATAAATCATAACCTGACTCAGGAGCAGGTGATGGAAGCCGCATTGAGGAGCGAACATCATGTCGAAAAGCAATCCGTCTGAAGTGAAATTGGCCGTACCGACATCCG > NC_000913/3733293‑3733768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |