| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,702,802 | G→A | P23S (CCG→TCG) | dppF ← | dipeptide ABC transporter ATP binding subunit DppF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,702,802 | 0 | G | A | 87.5% | 28.4 / ‑0.7 | 17 | P23S (CCG→TCG) | dppF | dipeptide ABC transporter ATP binding subunit DppF |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (5/9); total (7/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.40e-01 | |||||||||||
CAGATCCTGCCCCTGGTAATACAGCTCGCCACCGGTGGGCATTTCAATCATCGTCAGCAACCGACCGAGGGTCGATTTACCGCAGCCAGATTCGCCCACTACTGCCAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAGGGGCAGCGCGGGTTAAGCAGGCAGCCGTTCGGGCGGTCGTACTTGCCGGGAACG > NC_000913/3702611‑3703030 | cAGATCCTGCCCCTGGTAATACAGCTCGCCACCGGTGGGCAGTTCAATCATCGTCAGCAACCGACCGAGGGTCGATTGACCGCAGCCAGAGTCGCCCACTACTGCCAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGTCGCGAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGc < 1:172691/235‑1 (MQ=255) gCTCGCCACCGGTGGGCATTTCAATCATCGTCAGCAACCGACCGAGGGTCGATTTACCGCAGCCAGATTCGCCCACTACTGCCAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGcc < 1:13305/221‑1 (MQ=255) gCATTTCAATCATCGTCAGCAACCGACCGAGGGTCGATTTACCGCAGCCAGATTCGCCCACTACTGCCAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATTCCTTTCTTCACCGAATAATGTTTTTTCAGGGCGATAGCCTGCAACAGCGGTGGTTGCAGGGTGGCCTCTTGTGTACTCATAGTGTCGGCGTCCCGGCATCATCAAGTGGGt < 1:176823/251‑1 (MQ=255) cAACCGACCGAGGGTCGATTTACCGCAGCCAGATTCGACCACTACTGCCAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAAACAGACGTTCCGGCGCGAACATGCCTTTCTTCCCCGCATAATGTTTTTTCAGGGCGATAGCCTGCCACAGCGGTTGTTGCAGGGTGGCCTCTTGCGAACTCATAGTGTCg > 1:246073/1‑208 (MQ=255) nggTCGATTTACCGCAGCAAGATTCGCCCACTACTGCCAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCAAGTggg > 1:261763/2‑220 (MQ=255) cAGCCAGATTCGCCCACTACTGCCAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAgcgcn < 1:80879/251‑2 (MQ=255) ccAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTAc > 1:273045/1‑150 (MQ=255) gTTCAAGGTTAAACGAAACGCCATCCAGCTCTTTAACCAGACGTTCCGGCGCGAACAGGGCTTTCTTCACCGAATAATGTTTTTTCAGGTCTATAGCCTTCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATan < 1:65264/141‑2 (MQ=255) ggTTACACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTc > 1:76190/1‑85 (MQ=255) tAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTCGATTGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCg < 1:122891/137‑1 (MQ=255) tttAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTc < 1:70496/106‑1 (MQ=255) aaCCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTg < 1:91498/201‑1 (MQ=255) aCCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATACTGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCCAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAg > 1:123830/1‑212 (MQ=255) ccAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGAATAATGTTTTGTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCAAg < 1:264097/129‑1 (MQ=255) cgAACATGCCTTTCTTCACCGAATAATGTTTTTTCAGGTCGATAGCCTGAAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCACGCGGGTAATGGCCTTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAGGGGCAGCGCGGGTTAAGCAGGCAGCCGTTCGGGCGGTCGTACTTGCCGGGAACg > 1:218345/1‑250 (MQ=255) tGCCTTTCTTCACCGAAGAATGTTTTTTCAGGTCGATAGCCTGCaan < 1:66378/47‑2 (MQ=255) tGCCTNNNTTNACNGNANAATGTTTTTTCAGGTCGATAGCCTGCAAc > 2:66378/1‑47 (MQ=38) ccGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAg > 1:54643/1‑72 (MQ=255) | CAGATCCTGCCCCTGGTAATACAGCTCGCCACCGGTGGGCATTTCAATCATCGTCAGCAACCGACCGAGGGTCGATTTACCGCAGCCAGATTCGCCCACTACTGCCAGCGTTTTGCCACGTTCAAGGTTAAACGAAACGCCATCCAGCGCTTTAACCAGACGTTCCGGCGCGAACATGCCTTTCTTCACCGGATAATGTTTTTTCAGGTCGATAGCCTGCAACAGCGGTTGTTGCAGGGTGGCCTCTTGCGTACTCATAGTGTCGGCCTCCCGGCATCATCAAGTGGGTAATGGCATTTGGACTGACGCCCGTCAGCGAGCATATTCAGCGCCGGTTCTTCAGCGCGACATCTGTCAGTGGCATAGGGGCAGCGCGGGTTAAGCAGGCAGCCGTTCGGGCGGTCGTACTTGCCGGGAACG > NC_000913/3702611‑3703030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |