| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,632,188 | G→A | L135F (CTT→TTT) | yhiJ ← | DUF4049 domain‑containing protein YhiJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,632,188 | 0 | G | A | 80.0% | 10.0 / ‑0.5 | 10 | L135F (CTT→TTT) | yhiJ | DUF4049 domain‑containing protein YhiJ |
| Reads supporting (aligned to +/- strand): ref base G (2/0); new base A (5/3); total (7/3) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.38e-01 | |||||||||||
GGTACTTGTGGGATCAACGGGTAAACAATTGGAGAAATAGATTCTGTCAGCGAACTGGGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGAAATTTTGTCATCTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCT > NC_000913/3632003‑3632427 | ngTACTTGTGGGATCAACGGGTAAACAATTGGAGAAATAGATTCTGTCAGCGAACTGGGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTaaataaat > 1:262402/2‑191 (MQ=255) cTGTCAGCGAACTGGGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGCTCTTTTCCAGTTCCAGATGAGTTTGTCCGACTCAGTAACTGCACCATCATTAGCATTATCATTTACTGTCATATTATTAAGCAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAAcc > 1:183669/1‑194 (MQ=255) ggggTTTTATCCTTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAATAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTACTTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTTCTACGTAGAATATGAg > 1:102841/1‑243 (MQ=255) ggTTTTATCATTGTTTAGAATTCAATNTCAGATNNATNATATTGCGATATTTTCCAGNTCNNNANNNGNTTGTGNGANNCAGTAACTGNAACATCATTAGCATTATAATTTACTGTCATATTATTAAATAAATAAACAATAANGAACCAATTNNTATCGGTATTATCAAGAGAGCNACCNNANntntttncan > 2:74532/1‑188 (MQ=255) gTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATGGCGATATTTTCCAGTTCCATATGGCTTTTTACGACTCAGTAACTGCAACATCATTAGCATTAACATTTACTTTCATATTAGTAAATAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTcac < 1:323856/202‑1 (MQ=255) cAGATACATTATATTGCGATAGTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAATAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATg < 1:74532/250‑1 (MQ=255) ggTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCCTTTACTGTCATATTATTACATAAATCAACAATACTGCACCAATTACTATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTAtt > 1:207819/1‑128 (MQ=255) cAACATCATTAGCATTATCATTTACTGTCATATTATTAAATAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTg > 1:13913/1‑111 (MQ=255) cATTTACTGTCATATTATTAAATAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGc < 1:212043/152‑1 (MQ=255) atatACTGTCATATTATTAAATAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGANCACNNNNNccnnnnnn > 2:199446/4‑144 (MQ=255) cATATTATTAAGTAAATAAACAATACTGCACCAATTAATATAGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGAAATTTTGTCATCTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCt > 1:301772/1‑251 (MQ=255) | GGTACTTGTGGGATCAACGGGTAAACAATTGGAGAAATAGATTCTGTCAGCGAACTGGGGTTTTATCATTGTTTCGAATTTAATATCAGATACATTATATTGCGATATTTTCCAGTTCCAGATGGGTTTGTACGACTCAGTAACTGCAACATCATTAGCATTATCATTTACTGTCATATTATTAAGTAAATAAACAATACTGCACCAATTAATATCGGTATTATCAAGAGAGCAACCGTAATTTTTGCTATTAATTGTCACAATAAACTGATAATTATTATTCCTACGTAGAATATGAGCACGCATGCCCGATAGCATACTATATTTTTCTGAATGATCCGTTTGTATGGTAAATGAAATTTTGTCATCTTGAATAGATTGTTGGAACCGTTCTATTTGCCAATCATCTATTTTTTCCACAACCT > NC_000913/3632003‑3632427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |