| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,575,673 | G→A | intergenic (+9/+48) | yhgN → / ← gntU | MarC family putative inner membrane protein YhgN/low‑affinity gluconate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,575,673 | 0 | G | A | 86.7% | 25.5 / ‑1.2 | 15 | intergenic (+9/+48) | yhgN/gntU | MarC family putative inner membrane protein YhgN/low‑affinity gluconate transporter |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (5/8); total (6/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 | |||||||||||
CGCTGATGTTGTTGTCTCATCAGTACCCGAATCAGATGGGGCATCTGGTGATTGCTCTGCTGCTGGCCTGGGGCGGCACCTTTGTCATCCTGCTACAGTCTTCGCTATTTTTACGTCTGCTGGGCGAGAAAGGGGTGAACGCACTTGAACGCCTGATGGGATTGATTCTGGTGATGATGGCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAGTTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGCGAACAAACTTAACTCAACAGCTGGAACGCAATCATCCCAACGATGGCACCGACAGTGCCGAGGATGGTTTCCATCATGGTCCAGGTTTTCAGCGTTTCGGCTTCGGTCGCGCCGGTAAATTTACCGAACAACCAGAAACCGGCGTCGTTAACGTGGCTGACAACAATC > NC_000913/3575438‑3575880 | cGCTGATGTTGTTGTCTCATCAGTACCCGAATCAGATGGGGCATCTGGTGATTGCTCTGCTGCTGGCCTGGGGCGGCACCTTTGTCATCCTGCTACAGTCTTCGCTATTTTTACGTCTGCTGGGCGAGAAAGGGGTGAACGCACTTGAACGCCTGATGGGATTGATTCTGGTGATGATGGCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAATTTTTCGAAAAGAAc > 1:114259/1‑251 (MQ=255) gggCGGCACCTTTGTCATCCTGCTACAGTCTTCGCTATTTTTACGTCTGCTGGGCGAGAAAGGGGTGAACGCACTTGAACGCCTGATGGGATTGATTCTGGTGATGATGGCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAATTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGCGAACAAACTTAACTCAACAGCTGGAACGCAATCATCCCAACGATgg < 1:123168/251‑1 (MQ=255) gggCGGCACCTTTGTCATCCTGCTACAGTATTCGCTATTTTTACGTCTGCTGGGCGAGAAAGGGGTGAACGCACTTGAACGCCTGATGGGATTGATTCTGGTGATGATGGCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAATTTTTCGAAAAGAACCCGGTAGCGTCACAAc > 1:169413/1‑197 (MQ=255) gcggcACCGTTGTCATCCTTCTACAGTCTGCGTTATTTGTACGTCTGCTGGGCGAGAAAGGGGTGAACACTCTTTACCGCCTGATGTGATTGATTCTGGTGATTATGGCAATTCTGATTGTCGTCGACGGCTTTCGTATGTGGATGAAGGGGTAACGAGGAGAATTTTTCGaaaan < 1:34995/176‑2 (MQ=255) cAGTCTTCGCTATTTTTACGTCTGCTGGGCGAGAAAGGTGTGATCGCACTTGAACGCCTGATGGGATTGATTCTGGAGATGATGTCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAGTTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGCGAACAGACTTAACTCATCATCTGGAACGCAATCTTCCCAACGATGGCACCGACAGTGCCGAGGATGGTTTc < 1:144537/251‑1 (MQ=255) gTCTTCGGTGTTTGTACGTCTGTTGGGGGAGAAAGGGGAGAACGCACTTGAACTTTTGATGGGGTTGGTTTTGGTGATGATGCTAAAGCATATGTGCCGCGAGTGTATTCGAATGTGGATGAAGGGGTAACGAGGTGAATTTTTCGAAAAGAAc < 1:49596/154‑1 (MQ=255) cGCTATTTTTACGTCTGCTGGGCGCGAACGGGGTGAACGCACTTGAACGCCTGATGGGATTGATTCTGGTGATGATGGCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAGTTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGCGAACAAACTTAACTCAACAGCTg > 1:115695/1‑196 (MQ=255) gAACGCACTTGAACGCCTGATGGGCTTGATTCTGGTGATATTGGCAACCCAGATGTTCATCGGCGGCATTCGAATGTGGCAGAAGGGCAACCGAGGAGAATTTTTCGAAAATCACCCGGTAGCGTCCTAACTCCCGGGCGAACAAACATAACTCAACAGCTGGAACGCAATCATCCCAACGATGGCACCGACAGTGCCGCGGATGGTTTCACTCATGGTCAAGGTTTTCAGCGTTTCGGCTTCGGTCgcgc > 1:54670/1‑251 (MQ=255) gggATTGATTCTGGTGATGATGGCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAATTTTTCGAAAAGAACCCGGTAGCGTc > 1:21512/1‑105 (MQ=255) attgattCTGGTGATGATGGCAACCCAGATGTTCCTCGACGGCAGTCGAATGTGGATGAAGTGGTAACGAGGAGAATTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGCGAAc < 1:294717/119‑1 (MQ=255) gnntCTGGTNNTGATGGCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAATTTTTCGAAAAGACCCCGGTAGCGTc < 2:21512/99‑1 (MQ=255) cccAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAATTTTTCGAAAAGac > 1:112805/1‑66 (MQ=255) gATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGTTAACGAGGAGAAGTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGc < 1:128355/88‑1 (MQ=255) gCATTCGAATGGGGATGAAGGGGTNACTAGGAGAANTTTNNGAAANGNANCCGGTAGCGTCACAACTACCGGGCGAACANACTTAACTCAACAGCTGGAACGCNNTCNNNCCNNCGATg < 2:240285/119‑1 (MQ=255) ggagAATTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGCGAACAAACTTAACTCAACAGCTGGAACGCAATCATCCCAACGAGGGCACCGACAGTGCCGAGGATGGTTTCCATCATGGTCCATGTTTTCAGCGTTTCGGCTTCGGTCGCGCCgg < 1:249245/160‑1 (MQ=255) gTTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGCGAACAATCTTAACTCAACAGCTGGAACGCAATCATCCCAGCGATGGCACCGACAGTGCCGATGATTGTTTCCATCATGGTCCAGGTTTTCATCTTTTCGTCGTCGGTCGCGCCGGTAAATTTACCGAACAACCAGAAACCTGCTTCGTTAACGAGGCTGACAACAATc < 1:273005/208‑1 (MQ=255) | CGCTGATGTTGTTGTCTCATCAGTACCCGAATCAGATGGGGCATCTGGTGATTGCTCTGCTGCTGGCCTGGGGCGGCACCTTTGTCATCCTGCTACAGTCTTCGCTATTTTTACGTCTGCTGGGCGAGAAAGGGGTGAACGCACTTGAACGCCTGATGGGATTGATTCTGGTGATGATGGCAACCCAGATGTTCCTCGACGGCATTCGAATGTGGATGAAGGGGTAACGAGGAGAGTTTTTCGAAAAGAACCCGGTAGCGTCACAACTACCGGGCGAACAAACTTAACTCAACAGCTGGAACGCAATCATCCCAACGATGGCACCGACAGTGCCGAGGATGGTTTCCATCATGGTCCAGGTTTTCAGCGTTTCGGCTTCGGTCGCGCCGGTAAATTTACCGAACAACCAGAAACCGGCGTCGTTAACGTGGCTGACAACAATC > NC_000913/3575438‑3575880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |