| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,443,461 | C→T | G213S (GGC→AGC) | secY ← | Sec translocon subunit SecY |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,443,461 | 0 | C | T | 80.0% | 12.6 / ‑2.5 | 10 | G213S (GGC→AGC) | secY | Sec translocon subunit SecY |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (7/1); total (8/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGGAACAGAATAATACTGGAAGCGAAGATTGCCGGGATTACCCCCGCCATATTCACTTTCAGCGGTAAATGTGTGCTCTGTGCAGCATAGACACGACGACCTTGCTGACGTTTCGCGTAGTTTACCACAATGCGGCGTTGACCACGCTCAACAAATACAACAAAGAACGTCACTGCAAATACTAATACTGCAACCAACAGCAACACGAGGAAGTGCAGGTCGCCTTGACGCGCTTGCTCGATAGTATGGGCAATGGCTGGCGGGAGTCCCGCGACAATACCGGCGAAGATAATGATTGAAATACCGTTGCCGATACCTCGTTCAGTAATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATATT > NC_000913/3443238‑3443677 | gagAACAAAATAATACTGAAAGCGAATATGGCCGGGTTCCCCCCCGCCATATTCACTTTCAGCGGTAAATGTGTGCTCTGTGCAGCATAGACACGACGACCTTGCTGACGTTTCGCGTAGTTTACCACAATGCGGCGTTGACCACGCTCAACAAATACAACAAAGAACGTCACTGCAAATACTAATACTGCAACCAACAGCAACACGAGGAAGTGCAGGTCTCTTTGACGCGCTTGCTCGATAGTATGGGc < 1:269537/249‑1 (MQ=255) taataCTGGAAGCGAAGATTGCCGGGATTACCCCCGCCATATTCACTTTCAGCGGTAACTGTGTGCTCTGTGCAGCATAGACACGACGACATTGCTGACGTTTCGCGTAGTTTACCACAATGAGGCGTTGACCACGCTCAACAAATACAACAAAGAACGTCACTGCAAATACTAATACTGCAACCAACAGCAACACGAGGAAGTGCAGGTCGCCtt > 1:298807/1‑216 (MQ=255) ctGTGCAGCATAGACACGACGACCTTGCTGACGTTTCGCGTAGTTTACCACAATGCGGCGTTGACCACGCTCAACAAATACAACAAAGAACGTCACTGCAAATACTAATACTGCAACCAACAGCAACACGAGGAAGTGCAGGTCGCTTTGACGCGCTTGCTCGATAGTATGGGCAATGGCTGGCGGGAGTCCCGCGACAATACCGGCGACGATAATGATTGAAATACCGTTGCCGATACCTCGTTCAGTa > 1:10298/1‑250 (MQ=255) tACCACAATGCGGCGTTGACCACGCTCAACAAATACAACAAAGAACGTCACTGCAAATACTAATACTGCAACCAACAGCAACACGAGGAAGTGCAGGTCGCTTTGACGCGCTTGCTCGATAGTATGGGCAATGGCTGGCGGGAGTccc > 1:9354/1‑148 (MQ=255) cacaATGCGGCGTTGACCACGCTCAACAAATACAACAAAGAACGTCACTGCAAATACTAATACTGCAACCAACAGCAACACGAGGAAGTGCAGGTCGCTTTGACGCGCTTGCTCGATAGTATGGGCAATGGCTGGCGGGAGTCCCGCGACAATACCGGCGAAGATAATGATTGAAATACCGTTGCCGATACCTCGTTCAGTAATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACtt > 1:23122/1‑250 (MQ=255) cTCAACAAATACAACAAAGAACGTCACTGCAAATACTACTACTGCAACCAACAGAAACACGAGGAAGTGCAGGTAGCTTTGACGCGCTTGCTCGATCGTATggg > 1:153749/1‑104 (MQ=255) ctaatactGCAACCAACAGCAACACGAGGAAGTGCAGGTCGCTTTGACGCGCTTGCTCGATCGTATGGGCAATAGCTGGCGGGAGACCCGCGACACTCCCGGCGAAGATAATGATTGCAATACCGTTGCCGATACATCGTTCAGTAATTTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCCGGCCTTGCATAcc > 1:319534/1‑250 (MQ=255) ncaaccaacAGCAACACGAGGAAGTGCAGGTCGCTTTGACGCGCTTGCTCGATAGTATGGGCAATGGCTGGCGGGAGTCCCGCGACAATACCGGCGAAGATAATGATTGAAATACCGTTGCCGATACCTCGTTCAGTAATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATAtt > 1:81807/2‑251 (MQ=255) tcaacAGCAACACGAGGAAGTGCAGGTCGCTTTGACGCGCTTGCTCGATAGTATGGGCAATGGCTGGCGGGAGTCCCGCGACAATACCNNCGAAGa > 2:3968/2‑96 (MQ=255) tGCAGGTCGCCTTGACGCGCTTGCTCGATAGTATGGGCAATGGCTGGCGGGAGTCCCGCGACAATACCGGCGAAGATAATGATTGAAATACCGTTGCCGATACCTCGTTCAGTAATCTGGTCGCCCAACCGCATCAGGAACATGGTTCCTGGGACCAGACTTACAACAGCg < 1:277072/171‑1 (MQ=255) | GGGAACAGAATAATACTGGAAGCGAAGATTGCCGGGATTACCCCCGCCATATTCACTTTCAGCGGTAAATGTGTGCTCTGTGCAGCATAGACACGACGACCTTGCTGACGTTTCGCGTAGTTTACCACAATGCGGCGTTGACCACGCTCAACAAATACAACAAAGAACGTCACTGCAAATACTAATACTGCAACCAACAGCAACACGAGGAAGTGCAGGTCGCCTTGACGCGCTTGCTCGATAGTATGGGCAATGGCTGGCGGGAGTCCCGCGACAATACCGGCGAAGATAATGATTGAAATACCGTTGCCGATACCTCGTTCAGTAATCTGTTCGCCCAACCACATCAGGAACATGGTTCCTGTGACCAGACTTACAACAGCGGTGAAGTAGAATGCAAAGCCCGGGTTAATCACCAGGCCTTGCATACCAGGCATATT > NC_000913/3443238‑3443677 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |