| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,351,225 | G→A | P601S (CCG→TCG) | arcB ← | sensor histidine kinase ArcB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,351,225 | 0 | G | A | 82.3% | 25.9 / 3.0 | 17 | P601S (CCG→TCG) | arcB | sensor histidine kinase ArcB |
| Reads supporting (aligned to +/- strand): ref base G (1/2); new base A (5/9); total (6/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.73e-02 | |||||||||||
TGATCATCGCGGTTAGCGCCGGAACAGAAAGCGGCTTACTCAGCACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACGTTCAGTTCAATGTCTTCCACCAGCAGCACATTCAGCGCCGGTAAAGGC > NC_000913/3351108‑3351463 | tGATCATCGCGGTTAGCGCCGGAACAGAAAGCGGCTTACTCAGCACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAA‑TCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGGCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTGAAACATCGCCAGCGCCGCCTTGCCgg < 1:258223/248‑1 (MQ=255) cntcGCGGTTAGCGCCGGAACAGAAAGCGGCTTACTCAGCACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCg > 1:254151/1‑205 (MQ=255) atcGCGGTTAGCGCCGGAACAGAAAGCGGCTTACTCAGCACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTACAGCACGTTAGCGGTTAAGGCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCTGTCAGATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCgn < 1:63301/244‑2 (MQ=255) gcgGTTAGCGCCGGAACAGAAAGCGGCTTACTCAGCACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATAGCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACATCAGGTCGTATTCGCCCGGTTTAAACATCGCCAGCGCCGCCTTGCCGGTCATGGCGAc < 1:157720/251‑1 (MQ=255) gcgGTTAGCGCCGGAACAGAAAGCGGCTTACTCAGCACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTGCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGATAAAGCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGATATATCCAGCCCGTTCATATCTGGCAACTGAATATCCAGCAACATCAGGTCGGATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGAc < 1:304485/251‑1 (MQ=255) gctccGGAACAGAAAGCGGCTTACTCAGCACATCATACATTCCAGCACTGACGTCCTCATATTTGTCCTTCAGCACGTTAGCAGTTACGGCAACCACCGACGATAACCCCTCGCGCGGATAACGTTTCCTCAGGTCACGAATAATATACAGCCCGGTCACATCTAGCAACTGCATCTCCAGCAACACCCGGTCGCATTAGAACGGTTTAAACATCTCCAgcgc > 1:231538/4‑223 (MQ=255) gCTTACTCAGCACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATgg < 1:50671/222‑1 (MQ=255) gTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTg > 1:76956/1‑202 (MQ=255) ttntCTNTNNGNNCGTNAGCGGTTAAGGCCACCAGCGGNNATAAATCCTNGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGNCAACTGAATNNCCNGCAACNCNNNGNNNTANTCGCCCGGTTTAAACATCTNCANNGCCGCCNTGCCGGTCATGGCGACATCAACGCTg < 2:76956/192‑1 (MQ=255) gtCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATc > 1:5530/1‑84 (MQ=255) gtCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATc < 2:5530/84‑1 (MQ=255) tAGCGGTTAAGGCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACAGCTGCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACGTTCAGTTCAATGTCTTCCACCAGCAGCACATTCAg < 1:284868/250‑1 (MQ=255) ncGGTTAAGGCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTc > 1:195804/2‑156 (MQ=255) aGGCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGCGAGATACCAAGCCCGGTCATCTCTGGCAACTCAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGc > 1:179610/1‑144 (MQ=255) ggCCACCAGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGAc < 1:135536/156‑1 (MQ=255) gCCACCAGCGGCGATAAATCCTCGCTCGGATAACGTTGCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTc < 1:294016/104‑1 (MQ=255) nnacnnNNNGCGNAAATTCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGcctgtt < 2:195804/144‑5 (MQ=255) caccaGCGGCGATAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAAGATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGCTACCTAATTTTTCCAACACAGAACGCGCAACAATCACGTTCAGTTCAATGTCTTcgac < 1:45546/222‑4 (MQ=255) ggcgaTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCGGCCTGGCCGGTCATGGCGACATCAACGCTGTTACCTAAGGCTTCCAGCACAGAACCTGCAACAAGCCCGTTCAGTTCAAGGTCTGCCACCAGCAGCACATTCAGCGCCGGTAAAGGc < 1:302579/243‑1 (MQ=255) | TGATCATCGCGGTTAGCGCCGGAACAGAAAGCGGCTTACTCAGCACATCATCCATTCCAGCATTGAGGTACTCTTGTTTGTCTTTCAGCACGTTAGCGGTTAAGGCCACCAGCGGCGGTAAATCCTCGCGCGGATAACGTTTCGTCAGTTCACGAGAGATATCCAGCCCGGTCATATCTGGCAACTGAATATCCAGCAACACCAGGTCGTATTCGCCCGGTTTAAACATCTCCAGCGCCGCCTTGCCGGTCATGGCGACATCAACGCTGTTACCTAATTTTTCCAGCACAGAACGCGCAACAATCACGTTCAGTTCAATGTCTTCCACCAGCAGCACATTCAGCGCCGGTAAAGGC > NC_000913/3351108‑3351463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |