| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,259,361 | G→A | P97S (CCA→TCA) | tdcG ← | L‑serine deaminase III |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,259,361 | 0 | G | A | 81.0% | 32.1 / 2.4 | 22 | P97S (CCA→TCA) | tdcG | L‑serine deaminase III |
| Reads supporting (aligned to +/- strand): ref base G (1/3); new base A (10/7); total (11/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.11e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.78e-01 | |||||||||||
CAGCAGTTCACCTGCTGAGTGGAAATCGTAAGGTACGGACGTTTCGACATCGTGCGACAGGCCGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGGCAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGT > NC_000913/3259116‑3259595 | cagcagTTCACCTGCTGAGTGGAAATCGTAAGGTACGGACGTTTCGACATCGTGCGACAGGCCGAAGTGTTCTTCTTCGTCAATAAACCCGCCGCCGACAGAGTAATATGTTTTACTTAAGAGCTCTTCCTGTCCCTTCCAGGCAGGGATCCGCATTCCGTTCTCATGGCGAGGCAACATTGCGGGATGGAAGATAATGTGCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGACAgn < 1:41179/250‑2 (MQ=255) tCGACATCGTGCGACAGGCCGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGAAATAGGTTTTACTTAATAGCTCTTCCTGTCACTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGAGAGGCAACATTTCGGTATGGAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGGCAGCCGCCCGCTGCGCGTTACTAACTCTATAACTGCAGGGATCtcat > 1:56494/1‑250 (MQ=255) gtTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTgg < 1:133923/178‑1 (MQ=255) tcGACAATAAACCCGCCGCCGACAGAGTACTAGGTTTTCATTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACAGTTCGGGATGGAAGATAATGTTCTTTGATACAGGAAAATCAACAATATGCGCAACAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGAGCTCATCAATGACAACATCCTGCGGACTGTTTCCTGcn < 1:58056/249‑2 (MQ=255) gACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTACTGTCCCTTCCAGGCAGCGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCTTTGCTAAAGGAAAATCAACAATCTGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGa > 1:234339/1‑221 (MQ=255) tAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCg > 1:4389/1‑251 (MQ=255) gCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCTTTGCTACAGGAAAATCGACAATATGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCTATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCg < 1:319928/226‑1 (MQ=255) cATNNCGAGGCAACATTTCGGGATGGAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGACAGccgcacgc < 2:19771/93‑1 (MQ=255) ggCGAGGCAACATTTCGGGATGGAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGGCAGCCGCCCGCTGCGCGTTACTAACTCTATAATTGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCggn < 1:61222/250‑2 (MQ=255) gCAACATTTCGGGATGGAAGATAATGTTCATTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACAGCCTGCGGACTGTTTCCTGCCAGTCCCATGATGAGGGCGACATCCGGGGCATGGCCTTGGCCCGTCAGTTACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAg < 1:280157/251‑1 (MQ=255) gATGGAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGa > 1:256900/1‑190 (MQ=255) tGGAAGTTAATGTTCTTTGCTACAGGAAAATCAACAATATCCGCACCAGATGCCACTGACAGCCGCACGGTGCGCGTTACTAACTCTATAAATGCAAGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCAGTACAGATACAACACAATATGGCTCGTCAGGGGTAATAAACCGCTACTTTCCa > 1:74949/1‑250 (MQ=255) ggAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGGCAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAGCCGCTACTTTCCAGc < 1:274628/251‑1 (MQ=255) ggAAGATAATGTTATTTGCTACAGGAAAATCAACAATCTGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGCCTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAGCCGCTACTTTCCAGc > 1:268285/1‑251 (MQ=255) naaGATAATGTTCTTTGCTACAGGCAAATCAACAATATGCGCATCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAGCCGCTACTTTCCAGcc > 1:85460/2‑251 (MQ=255) aaTGTTCTTTGCTACAGGAAAAACAACAATATGCGCGCCAGATGGCACGGTCGGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTg < 1:302470/157‑1 (MQ=255) cTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGGCAGCCGCCCGCTGCGCGTTACTAACCCTATAAATGCAGGGATCTCATCAATGACAACAGCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGAc < 1:46818/175‑1 (MQ=255) ntACAGGAAAATCAACAATATGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAGCCGCTACTTTCCAGCCGATCAATAAAACttttt > 1:80240/2‑251 (MQ=255) cAGGAAAATCAACAATATGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAatat > 1:123702/1‑195 (MQ=255) aacaaTATGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGcc < 1:97972/106‑1 (MQ=255) aacaaTATGCGCACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAGCCGCTACTTTCCAGCCGATCAATAAGACGTTTGCCGGcattcatt < 1:107117/250‑1 (MQ=255) gcACCAGATGCCACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATAAATGAGAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCAGTTAATAAGACGCTACTTTCCCGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCACCACGGt > 1:229933/1‑251 (MQ=255) ccACTGACAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAGCCGCTACTTTCCAGCCGACCaa > 1:73214/1‑207 (MQ=255) | CAGCAGTTCACCTGCTGAGTGGAAATCGTAAGGTACGGACGTTTCGACATCGTGCGACAGGCCGAAGTGTTCTTCTTCGACAATAAACCCGCCGCCGACAGAGTAATAGGTTTTACTTAATAGCTCTTCCTGTCCCTTCCAGGCAGTGATCCGCATTCCGTTCTCATGGCGAGGCAACATTTCGGGATGGAAGATAATGTTCTTTGCTACAGGAAAATCAACAATATGCGCACCAGATGCCACTGGCAGCCGCCCGCTGCGCGTTACTAACTCTATAAATGCAGGGATCTCATCAATGACAACATCCTGCGGACTGTTTCCTGCCAGTCCCATGATGATGGCGACATCCGTGGCATGGCCTTTGCCCGTCAGTGACAACGACCCGTACAGATCGACCACAATATGGCTCGTCGCGGTTAATAAGCCGCTACTTTCCAGCCGATCAATAAAACTTTTTCCGGCATTCATTGGCCCCACGGT > NC_000913/3259116‑3259595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |