| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,196,387 | C→T | E123K (GAA→AAA) | hldE ← | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,196,387 | 0 | C | T | 91.7% | 24.1 / ‑3.2 | 12 | E123K (GAA→AAA) | hldE | fused heptose 7‑phosphate kinase/heptose 1‑phosphate adenyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (7/4); total (7/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.85e-01 | |||||||||||
ATTCCGAGAGATTCGGCGTTAACAGCGTAGCGCCGCGGTAGCGCTCAAAATCGGTACCTTTTGGATCAATCAGCACCGGAACACCCGCTTTACGCGCCAGTTGGATCATCTGCTGTACGCTTGCCAGCGCACCTTTGGCGTAGTCAGAAAGCACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTCTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCGTAATTTGGTAATGGTCGGATGCGTCGGTACAGAAACGAAGTCGCATTTGACGTTGACGTCGGCCAGAGATTTACTCAGCGCGCGCGCTGCATCGTCAATGCCCGTCAACCCGACCAGGCGTGCATTAGCACCGAGAGAAGCGATATTCATCGCCACGTTAGCCGCGCCGCCCGGACGTTCTT > NC_000913/3196159‑3196614 | aTTCCGAGAGATTCGGCGTTAACAGCGTAGCGCCGCGGTAGCGCTCAAAATCGGTACCTTTTGGATCAATCAGCACCGGAACACCCGCTTTACGCGCCAGTTGGATCATCTGCTGTACGCTTGCCAGCGCACCTTTGGCGTAGTCAGAAAGCACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAgn < 1:203781/251‑2 (MQ=255) gTACCTTTTGGATCAATCAGCACCGGAACACCCGCTTTACGCGCCAGTTGGATCATCTGCTGTACGCTTGCCAGCGCACCTTTGGCGTAGTCAGAAAGCACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCGTAATTTGGTAATGGTCGGATGCGTCGGTAc > 1:290152/1‑251 (MQ=255) nttttGGATCAATCAGCACCGGAACACCCGCTTTACGCGCCAGTTGGATCATCTGCTGTACGCTTGCCAGCGCACCTTTGGCGTAGTCAGAAAGCACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCGTAATTTGGTAATGGTCGGATGCGTCGGTAccga > 1:198372/2‑247 (MQ=255) ccTTTTGCGTAGTCAGAAAGCACCAGCGCGCCACTCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAGCTgtt > 1:250155/1‑124 (MQ=255) gAAAGCACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCGTAATTTGGTAATGGTCGGATGCGTCGGTACAGAAACGAAGTCGCATTTGACGTTGACGTCGGCCAGAGATTTACTCAGCGCGCGCGCTGCATCGTCAATGCCCGTCAACCCGACCAGGCGTGc > 1:17107/1‑251 (MQ=255) gCACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCGTAATTTGGTAATGGTCGGATGCGTCGGTACAGAAACGAAGTCGCATTTGACGTTGACGTCGGCCAGAGATTTACTCAGCGCGCGCGCTGCATCGTCAATGc < 1:266369/225‑1 (MQ=255) cACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCGACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCGTAATTTGGTAATGGTCGGATGCGTCGGTACAGAAACGAAGTCGCATTTGACGTTGACGTCGGCCAGAGATTTACTCAGCGCGCGCGCTGCATCGTc > 1:172118/1‑219 (MQ=255) aGCGCGCCAAGCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCTGAATTGGGTAAGGGTCGGATGCGTCGGTACAGAAACGAAGTCGCATTTTACGTTGACGTCGGCCAGAGATTGACTCAGCGCGTGCGCTGCATCGTCAATGCCATTCATCCCGACCAGGCGTGCATTAGCAcc < 1:214490/251‑1 (MQ=255) gAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTTTTCACCATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTAccc > 1:53237/1‑106 (MQ=255) cGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTCTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCTTAATTTGGTAATGGTCGGATGCGGCGGTACAGAAACGAAGTCGCATTTGACGTTGACGTCGGCCAGAGAGTTACTCAGCGCGCGCGCTGCATCGTCAATGCCCGTCAACCCGACCAGGCGTGCATTAGCGCCGAGAGAAGCGATATTCATCGCCACGTTAgccgcgc < 1:181586/249‑1 (MQ=255) ngCANCGGCTGCGGATCAACACCTTCGAAACCTTTTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCGTAATTTGGTAATGGTCGGATGCGTCGGTACAGAAACGAAGTCGCATttgacgttgacg < 2:198372/137‑1 (MQ=255) cGGATCAACACCTTAGAAACCTTTTTCAAAATCCAGAAGGCTCAGCTGTTGGTTGCGGAAAAGTACCCGTAATTTGGTAATGGTCAGATGCGTCGGTACAGAAACAAAGTAGCACTTGACGTTGACGTCGGCCAGAGATTTACTCAGCGCGCGCGCTGCATCGTCAATGCCCGTCAACCCGACCAGGCGTGCATTAGCACCGAGAGAAGCGATATTAATCGACACGTTAGCCGCGCCGCCCGGACGttctt > 1:306641/1‑251 (MQ=255) | ATTCCGAGAGATTCGGCGTTAACAGCGTAGCGCCGCGGTAGCGCTCAAAATCGGTACCTTTTGGATCAATCAGCACCGGAACACCCGCTTTACGCGCCAGTTGGATCATCTGCTGTACGCTTGCCAGCGCACCTTTGGCGTAGTCAGAAAGCACCAGCGCGCCAATCGAACTCAGCGCCTGATTAATCCGCTCGTGCAGCGGCTGCGGATCAACACCTTCGAAACCTTCTTCAAAATCCAGACGGATCAGCTGTTGGTTGCGGGAAAGTACCCGTAATTTGGTAATGGTCGGATGCGTCGGTACAGAAACGAAGTCGCATTTGACGTTGACGTCGGCCAGAGATTTACTCAGCGCGCGCGCTGCATCGTCAATGCCCGTCAACCCGACCAGGCGTGCATTAGCACCGAGAGAAGCGATATTCATCGCCACGTTAGCCGCGCCGCCCGGACGTTCTT > NC_000913/3196159‑3196614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |