| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,133,781 | C→T | W59* (TGG→TGA) | yghS ← | putative ATP‑binding protein YghS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,133,781 | 0 | C | T | 93.8% | 38.3 / ‑3.6 | 17 | W59* (TGG→TGA) | yghS | putative ATP‑binding protein YghS |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (7/8); total (8/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
CCCGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGAATTAATTATTGACATATTACGTTGATTCACGAAAAACCCGGCAGTAAATAATGTATTGAATATTACGTGGTCCGTGCTCAGAATATCCGTTCAAC > NC_000913/3133560‑3134022 | cccGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGAAGAAAGCCTTGCTGGCTTTTACACAAAATTTTGCGAAAATTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGAAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCCATTCGCCCGGACGATTGccc > 1:282458/1‑251 (MQ=255) tCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGGGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAAt > 1:6570/1‑251 (MQ=255) gCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGt > 1:5248/1‑251 (MQ=255) cAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGcc < 1:184836/212‑1 (MQ=255) ttACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACGTGTGCCGCTTTACTTCGCAGATATCGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATGGCCCGAGAGAAATGTGTTCTTTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGccc < 1:325124/250‑2 (MQ=255) caacaTTTTGCGACACTTGTCCGCCCGCAAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCg > 1:252984/1‑178 (MQ=255) nccgccAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCGAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCACAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGtt > 1:191681/2‑185 (MQ=255) cccgccAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTgn < 1:201289/220‑2 (MQ=255) nnnnnnnnnnttNNNNNGCGNGGTTGAGGGCTGTTCGTGCACATGTGCCGCATTACTTCACAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCCTTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTCCTGtt < 2:191681/144‑1 (MQ=255) tGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAAGGTGGTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTc < 1:97658/175‑1 (MQ=255) gtcTTTTCGTGCACATGTGCCGCTTTACTCCGCAGATCACGCCCAAAAAGAGCGACACTA‑CAGGGGCGATGTGGCATACAATCGCCAACTAGCCCGGACGATTGCCCGAGATTAATGAGTTCTGTTGGCATTCTTGCTGCCCGTTCATTTACCAGGCTTGCCGTGCGGGTCGACTTa > 1:305228/3‑177 (MQ=255) gTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAAAAGGG‑AGATGTGAAATTCATTCGCCAATTCGCCAGGCCGATTGCCCGAGATAAATGTGTTATGTTGGcc > 1:159337/1‑121 (MQ=255) gNNGCTTTANNTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAAtg < 2:6570/99‑1 (MQ=255) cTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCt < 1:273462/173‑1 (MQ=255) cGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACAt > 1:11277/1‑153 (MQ=255) aGCTGTGAAATTCATTCGCCAATTCGCCCGGACGATGGCCCGAGATAAATGTGTTCTGTTTGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAg < 1:151131/101‑1 (MQ=255) gtgAAATTCATTCGCCAATTCGCCCGGACGAGTGCCCGAGATAAATGTGTTCTGGTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGTTCGATGTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGTCGTGGAATTAATTATTGACATAGTACGTTGATTCGCGAAAAACCCGGCAGTAAATAATGTATTGAATATTACGTGGTCCGTGCTCAGAATATCCGTTCAAc < 1:311832/249‑1 (MQ=255) | CCCGGCACTTCAACCTGCGGGTAGCGGTCGGTGATGAGCAGAAAGCCTTGCTGGCTTTTACACAACATTTTGCGAAACTTGTACGCCCGCCAGCAGGAAAGCAGATAGATAACCAGTGCAGTAATATTGCCAGGCGGTGTTGAGGGCTTTTCGTGCACATGTGCCGCTTTACTTCGCAGATAACGCCCAAAAGGTGCGCCAATAACAGGG‑AGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGAATTAATTATTGACATATTACGTTGATTCACGAAAAACCCGGCAGTAAATAATGTATTGAATATTACGTGGTCCGTGCTCAGAATATCCGTTCAAC > NC_000913/3133560‑3134022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |