| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,061,614 | G→A | T107I (ACC→ATC) | nac ← | DNA‑binding transcriptional dual regulator Nac |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,061,614 | 0 | G | A | 90.0% | 16.6 / ‑3.2 | 10 | T107I (ACC→ATC) | nac | DNA‑binding transcriptional dual regulator Nac |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (4/5); total (5/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.41e-01 | |||||||||||
AAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCC‑GGAAATTCAGCGCGAACCGCCTGTAATAAGGGCATGGTGATGGATGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGCCTGACCAACGTTATGCACCGCCAGTTGGGCCTGTTCACACTGACGTAAAATGGCCCGCGCATGGGTATAGAGAATTTTTCCGGCGTCTGTTGGTGTAACGCCCCGCTTTGTACGGATCAAAAGTTGTTGATTTAACTCACCTTCCAGTGTGGCAACCTGCTGGCTGAGCGCTGGTTGTGCGATATG > NC_000913/2061436‑2061858 | aaGATCTTCTTTCAGCAAAGCATGACTGGATACACCAGCCACAGGGGAATGATCATAAATCAACGCCATATCGAGTTGGTGCTTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCC‑GGAAATTCAGCGCGAACCGCCTGTAATAAGGGCATGATGATGGATGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGCCTGACCAACGTTAt > 1:132821/1‑251 (MQ=255) ataTCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCC‑GGAAATTCAGCGCGAACCGCCTGTAATAAGGGCATGATGATGGATGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGccac > 1:311502/3‑226 (MQ=255) ccACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCC‑GGAAATTCAGCGCGAACCGCCTGTAATAAGGGCATGATGATGGATGACGCAGCGGTTCCTGGTGc > 1:69245/1‑169 (MQ=255) gTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCC‑GGAAATTCAGCGCGAACCGCCTGTAATAAGGGCATGATGATGGATGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGc > 1:172928/1‑159 (MQ=255) ataaaTTTTTCTTTAAGCACTGCACCTCTATTTTCATGAAGATAGATAACGA‑CTCCCGGAAATTCAGCACAAACCGCCTGTAATAAGGGCATGATGATGGATGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGCCTGACCAACGTTATGCACCGCCAGTTGGGCCTGTTCACACTGACGTAAAATGGCCCGCGCATGGGTATAGAGAATTTTTCCGGCGTCTGTTGGTGTaan < 1:205804/248‑2 (MQ=255) ngATCTCC‑GGAAATTCAGCGCGAACCGCCTGTAATAAGGGCATGGTGATGGATGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGCCTGACCAACGTTATGCACCGCCAGTTGGGCCTGTTCACACTGACGTAAAATGGCCCGCGCATGGGTATAGAGAATTTTTCCGGCGTCTGTTGGTGTAACGCCCCGCTTTGTACGGATCAAAAGTTGTTGATTTAACTCACCTTCCAgt > 1:202892/2‑251 (MQ=255) tttgtaaaTTCAGCTCAAACCGCCTGGAATAAGGGCATGATGATGGATGACGCATCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGCCTGACCAACGTTATGCACCGCCATTTGGGCCTGTTCACACTGACGTAAAATGGCCCGCGCATGGGTATAGAGAATTTGTCCGGCGTCTGTTGTTGTAACTCCCCGCTTTGTTCGGATCAAAAGTTGTTGATTTAACTCACCTTCCAGTGTgg < 1:234277/245‑1 (MQ=255) taataaTGGCATGATGATGGAGGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAAGGCCTGACCAACGTGATGCACCGCCAGTTGGGCCTGTTCACACTGACGTAAAATTGCCCGCGCATGGGTATAGATAATTTTGCCGGCGTCTGGTGGGGTAATGCCCCGCTTTGTACGGATCAAAAGTTGTTGATTTAACTCACCTTCCAgt < 1:303757/220‑1 (MQ=255) ggCATGATGATGGATGACTCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGCCTGACCAACGTTATGCACCGCCAGTTGGGCCTGTTCACACTGACGTAAAATGGCCCGCGCATGGGTATAGAGAATTTTTCCGGCGTCTGTTGGTGTAACGCCCCGCTTTGTACGGATCAAAAGTTGTTGATTTAACTCACCTTCCAGTGTGGCAACCTGCTGGCTGAGCGCTGGTTGTGCGATATg < 1:272518/251‑1 (MQ=255) ggCATGATGATGGATGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGCCTGACCAACGTTATGCACCGCCAGTTGGGCCTGTTCACACTGACGTAAAATGGCCCGCGCATGGGTATAGAGAATTTTTCCGGCGTCTGTTGGTGTAACGCCCCGCTTTGTACGGATCAAAAGTTGTTGATTTAACTCACCTTCCAGTGTGGCAACCTGCTGGCTGAGCTCTGGTTGTGCGATATg < 1:272511/251‑1 (MQ=255) | AAGATCTTCTTTCAGCAAAGCCTGACTGGATACACCAGCCACAGGGGAATGCTCATAAATCACCGCCATATCGAGTTGGTGATTTATCAATTTTTCGTTAAGCACTGCACCACTATTTTCATGAAGATAGATAACGATCTCC‑GGAAATTCAGCGCGAACCGCCTGTAATAAGGGCATGGTGATGGATGACGCAGCGGTTCCTGGTGCAAAGCCAATCGAGACTTGCCCCGATAATGCCTGACCAACGTTATGCACCGCCAGTTGGGCCTGTTCACACTGACGTAAAATGGCCCGCGCATGGGTATAGAGAATTTTTCCGGCGTCTGTTGGTGTAACGCCCCGCTTTGTACGGATCAAAAGTTGTTGATTTAACTCACCTTCCAGTGTGGCAACCTGCTGGCTGAGCGCTGGTTGTGCGATATG > NC_000913/2061436‑2061858 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |