| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,020,842 | C→T | R252R (CGC→CGT) | fliM → | flagellar motor switch protein FliM |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,020,842 | 0 | C | T | 83.3% | 16.2 / ‑0.8 | 13 | R252R (CGC→CGT) | fliM | flagellar motor switch protein FliM |
| Reads supporting (aligned to +/- strand): ref base C (2/0); new base T (6/4); total (9/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.87e-01 | |||||||||||
ATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGGAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGCCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCGCAGATTTTAAAACTGAACCCCGGCGACGTCCTGCCGATAGAAAAACCCGATCGCATCATCGCCCATGTTGACGGCGTCCCGGTGCTGACCAGTCAGTATGGCACCCTCAACGGTCAGTATGCGTTACGGATAGAACATTTGATTAACCCGATTTTAAATTCTCTGAACGAGGAACAGC > NC_000913/2020657‑2021083 | atCACCACCTCGCCGCACGACATTGTGGTTAACACGCCGTTCCATGTGGAGATTGGCAACCTGACCGGCGACTTTAATATACGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGTCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCGc > 1:173736/1‑250 (MQ=255) cccccccccgccaaacgaagttGTGGTTACCCCGCCTTTCCTGGTGAATATTGGCCACCTGACCGGCGAATTTAATATCTCCCGCCCTTTCAGCATGCTCGAGCCGCTACGGGAATTGTGGTTTAACCCGCCGCTGGAAAACTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGTCAGGTGCAGCATGCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCGCAg < 1:293977/230‑1 (MQ=255) gTTCCATGTGGAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCCTTCAGCATGATCGAGCCGCTAAGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGCCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCGCAGATTTTAAAACTGAAACCCGGCGACGTCCTGCCGAt > 1:207345/1‑249 (MQ=255) tgCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCAGCTACGGAAATTGTAGGTTAACACGCAGCTGGAAAACTCGCGTAATGAAGATCAGAAATGGCGCGATAACCTGGTGCGACAGGTGCAGCCTTCCCAGCTGGCGATGGTCGCCAACTTTGCCGATATCTCGCTACGACTGTCg > 1:231773/2‑183 (MQ=255) naGCATGATCGAGCCGCTACGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGTCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGCTATCTCGCTACGCCTGTCGCAGATTTTAAAAc > 1:261087/2‑170 (MQ=255) cAGCATGATCGAGCCGCTACGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGTCAGGTGCAGCATTCACAGCTGGAGCTGGTCGcc > 1:9586/1‑127 (MQ=255) ggTTAACCCGCCGCTGGAAAACTCGCGTAATGAAGATAGGAACTGGCGCGATAACCTGGTGCGTCAGGTGCAGCCTTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCg > 1:237499/1‑127 (MQ=255) gataccnnGCCGCTGGAAAACTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGTCAGGTGCAGCATTCACAGCTGGAGCTGGTCGcc < 2:9586/91‑1 (MQ=255) aCTCGCGTAATGAAGATCATAACTGGCGCGATAACCTGGTGCGTCAGGTGCAGCATTCACAGCTGGGGCTGGTCGCCAACTTTGCGGATATCGCGCTACGCCTGTCGCAGATTTTAAAACTGAACCCCGGCGGCGTCCTGCCGATAGAAAATCGCGATCGCATCATCGCTCAGGTTGACGGCGTCCCGGTGCTGACCAGTCAGTATGGCGCGCTCAACGGTCAGTATGCGTTACGGATAGAACATTTGAtt < 1:280791/251‑1 (MQ=255) cTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGCCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCGCAGATTTTAACACTGAACCCCGGCGACGTCCTGCCg > 1:298913/1‑142 (MQ=255) aTCAGAACTGGCGCGATAACCTGGTGCGTCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCGCAGATTTTAAAACTGAACCCCGGCGACGTCCTGCCGATAGAAAAACCCGATCGCATCATCGCCCATGTTGACGGCGTcccn < 1:61926/173‑2 (MQ=255) gcgATAACCTGGTGCGTCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATCTCTCGCTACGCCTGTAGCAGATTTTaa > 1:41645/1‑90 (MQ=255) ccTGGTGCGTCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCGCAGATTTTAAAACTGAACCCCGGCGACGTCCTGCCGATAGAAAAACCCGATCGCATCATCGCCCATGTTGACGGCGTCCCGGTGCTGACCAGTCAGTATGGCACCCTCAACGGTCAGTATGCGTTACGGATAGAACATTTGATTAACCCGATTTTAAATTCTCTGAACGAGGAACAGc > 1:310886/1‑251 (MQ=255) | ATCACCACCTCGCCGAACGACATTGTGGTTAACACGCCGTTCCATGTGGAGATTGGCAACCTGACCGGCGAATTTAATATCTGCCTGCCATTCAGCATGATCGAGCCGCTACGGGAATTGTTGGTTAACCCGCCGCTGGAAAACTCGCGTAATGAAGATCAGAACTGGCGCGATAACCTGGTGCGCCAGGTGCAGCATTCACAGCTGGAGCTGGTCGCCAACTTTGCCGATATCTCGCTACGCCTGTCGCAGATTTTAAAACTGAACCCCGGCGACGTCCTGCCGATAGAAAAACCCGATCGCATCATCGCCCATGTTGACGGCGTCCCGGTGCTGACCAGTCAGTATGGCACCCTCAACGGTCAGTATGCGTTACGGATAGAACATTTGATTAACCCGATTTTAAATTCTCTGAACGAGGAACAGC > NC_000913/2020657‑2021083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |