| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,929,785 | G→A | intergenic (‑78/+249) | yebE ← / ← yebF | DUF533 domain‑containing inner membrane protein YebE/secreted protein YebF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,929,785 | 0 | G | A | 84.6% | 19.3 / ‑0.6 | 14 | intergenic (‑78/+249) | yebE/yebF | DUF533 domain‑containing inner membrane protein YebE/secreted protein YebF |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (6/5); total (8/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.77e-01 | |||||||||||
GATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCG > NC_000913/1929565‑1930018 | gATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACTGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAAATGCGCAAATAAGCGGGGCGGTAGGCCGt < 1:287347/250‑1 (MQ=255) ccagccagTCCGCCGAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTGTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATATCCAGTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATg < 1:307605/203‑1 (MQ=255) agaagaACTGCTTTGCCCACGCCGGGATTGCAGTTCATTTAACCAGTTAGCAATATTTGCTCCTCAATAAACATTTTTAGTGACTATAGCCTAGCGGATGAGGATGTCAGAAAATGTATATCGAGAAAAAAAATGCGCAAATACGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTCTTTCCTGTATATCAGGTGATAAGGGTATTTTAGGTGAACGAAGATTGTCGTTTTGAGTgg > 1:132451/1‑251 (MQ=255) agaagaACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTCACCAGTTATCCATTTTTGCTCCTCAATAACCATTTTTCGTGCCTGTAGGATAGCGGATGAGGATGTCAGAAAATGCATATCGAGACAACCAATGCGCAAATAAGCGGGGCGGAAGCCAGTTCTACAAAGACATTCGCGCCCGGGAAGGTATTTACTGAATATCAGGGGATAAGGGTATTTTAGGTGAAAGAAGttcgatcggacgagcac > 1:167773/1‑236 (MQ=255) gCTTTGCCCAATCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCAGTTTTAGGGCCTGTAGCATATCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAAATGCGCAAATAAGCGGGGCgg < 1:215394/144‑1 (MQ=255) naaGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAAATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGa > 1:84141/2‑154 (MQ=255) aaTAACCATTTGTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAAATGCGCAAATAATCGGGGCGGTAGGCCGTTATCCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTTATAAGTGTATGTTAGGTGAAAGGAGTTTGTCGTTTTGAGTGGCATTGGTTGATGCTGACTGCCCGATGCGACTCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGc < 1:219910/251‑1 (MQ=255) aaCCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAACATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGtt > 1:271057/1‑251 (MQ=255) ttttAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAAATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTGTAGGTGAAAGGAGTTTGTCGTTTTGAGGGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTggg < 1:228149/250‑1 (MQ=255) ttAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAAATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGAGTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGc < 1:54328/250‑1 (MQ=255) gCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAAATGCGCACATAAGCGGGGCGGTAGGCCGTTATTCCAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCACAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTc > 1:285629/1‑251 (MQ=255) ggATGTCAGAAAATGTATATCGAGACAAAAAATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATg > 1:48681/1‑176 (MQ=255) gTATATCGAGACAAAAAATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCg > 1:13498/1‑250 (MQ=255) cAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCACAGAAATTCGCGCCCGGTAAGGAATTTACTGTATCTCAGGTGATAAGGGCATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGct > 1:290056/1‑152 (MQ=255) | GATTTATTTGCGACCAGCAGCCCAGCCAGTCCGCCTAATGCGCCTGGCACTAACAGTTTGACCAATCCCTGATCCGCAGACGAGGAGGTAGAAGAACTGCTTTGCCCAAGCAGGGATTGCAGTTGATTTAACCAGTTAGCCATATTTGCTCCTCAATAACCATTTTTAGTGCCTGTAGCATAGCGGATGAGGATGTCAGAAAATGTATATCGAGACAAAAGATGCGCAAATAAGCGGGGCGGTAGGCCGTTATTCAAAGAAATTCGCGCCAGGTAAGGTATTTACTGTATATCAGGTGATAAGGGTATTTTAGGTGAAAGTAGTTTGTCGTTTTGAGTGGCATTGTTTGATGCTGATTGCCCGATGCGACGCTGTTGCGTCTTCTCAGGCCTACGATTGTGGTGCGTTCTGGGGCGGACAAGGCACTCGCGCCGCATCCGCCAACAGTCAATCG > NC_000913/1929565‑1930018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |