| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,894,331 | G→A | V67I (GTT→ATT) | yoaC → | DUF1889 domain‑containing protein YoaC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,894,331 | 0 | G | A | 81.2% | 20.6 / 3.5 | 16 | V67I (GTT→ATT) | yoaC | DUF1889 domain‑containing protein YoaC |
| Reads supporting (aligned to +/- strand): ref base G (3/0); new base A (9/4); total (12/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.77e-01 | |||||||||||
GGATTTCATTGGTGCCATGGATGTATCAGCGCCAACACCAAGTTCGATGAATGAAAGCACGGCGAAGGGAATCTTTAAATATTTAAAAGAACTGGGAGTACCCGCGAGTGCCGCTGATATTACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGGTTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACATATAAAAAGCGTCCTTTTTCTCACAATCAAATGATCATCGGCTTCTATAACGAAATCGATACGGATTAGTGTGTTACTCGTCTTCATCCTC > NC_000913/1894159‑1894569 | ggATTTCATTGGTGCCATGGATGTATCAGCGCCAACACCAAGTTCGATGAATGAAAGCACGGCGAAGGGAATCTTTAAATATTTAAAAGAACTGGGAGTTCCCGCGATTGCCGCTGATATTACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATTATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGGTCTGTGATTAAAAATCCTGAATACTTTTCAACatata < 1:149021/245‑1 (MQ=255) cgcCAACACCAAGTTCGATGAATGAAAGCACGGCGAAGGGCATCTTTAAATATTTAAAAGAACTGGGAGTCCCCGCGAGTGCCGCTGATATTACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGATTGGGTGGGCAAAAAAAATg > 1:165939/1‑164 (MQ=255) atgaatgaAAGCACGGCGAAGGGAATCTTTAAATATTTAAAAGAACTGGGAGTACCCGCGAGTGCCGCTGATATGACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAgg < 1:163577/205‑1 (MQ=255) tAAATATTTAAAAGAACTGGGAGTACCCGCGAGTGCCGCTGATATTACGGCGCGAGCTGACAAGGAAGGCTGGAACCCTGGGTTAACGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATACGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAg > 1:187807/1‑215 (MQ=255) naaaGAACTGGGAGTACCCGCGAGTGCCGCTGATATTACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCAAGGAAAAAATGATTGGATGGGCAAACAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGAc > 1:59503/2‑223 (MQ=255) cccGCGAGTGCCGCTGATATTACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACATATAAAAAGCGTCCTTTTTCTCACAATCaa > 1:251545/1‑250 (MQ=255) cgcgAGTGCCGCTGATATTACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAACAAATGGTTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGGCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACATATAAAAAGCGTCCTTTTTCTCACAATCAAATg > 1:247796/1‑251 (MQ=255) gAGTGCCGCTGATATTACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACATATAAAAAGCGTCCTTTTTCTCACAATCAAATGatc > 1:76297/1‑251 (MQ=255) cTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAACTGGTTGGATGGGCAAACAAACTGGAGACAGGCGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTg > 1:131969/1‑142 (MQ=255) cTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTTATTAAAAATCCTGAAGACTGTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAAtt < 1:171151/151‑1 (MQ=255) ncAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGGTTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACAtata > 1:83678/2‑189 (MQ=255) ncAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACATATAAAAAGCGTCCTTTTTCTcac > 1:201883/2‑209 (MQ=255) cTGGAACCCTGGGTTCACGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAAtn < 1:195275/154‑2 (MQ=255) cTGGAACCCTGGGTTCACGGAAAAAATGAGTGGATGGGCAAAAACAATGGAGACAGGTGAACGTTCTGTGATTAAATATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAATTGCACTGGTCTGAGTTNATTNNNNNTcnnnnnnnnnn > 2:195275/1‑144 (MQ=255) gTTCACGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGAAAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCCACATATATGCAGGAAGAACTAACAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACATATAAAAAGCGTCCTTTTTCTCACAATCAAATGATCATCGGCTTCTATAACGAAATCGATACGGATTAGTGTGTTACTCGTCTTCAt > 1:213223/1‑251 (MQ=255) cGGAAAAAATGATTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACATATACAAAGCGTCCTTTTTCTCACAATCAAATGATCATCGGCTTCTATAACGACATCGATACGGATTAGTGTGTTACTCGTCTTCATCCTc > 1:219848/1‑250 (MQ=255) | GGATTTCATTGGTGCCATGGATGTATCAGCGCCAACACCAAGTTCGATGAATGAAAGCACGGCGAAGGGAATCTTTAAATATTTAAAAGAACTGGGAGTACCCGCGAGTGCCGCTGATATTACGGCGCGAGCTGACCAGGAAGGCTGGAACCCTGGGTTCACGGAAAAAATGGTTGGATGGGCAAAAAAAATGGAGACAGGTGAACGTTCTGTGATTAAAAATCCTGAATACTTTTCAACATATATGCAGGAAGAACTAAAAGCACTGGTCTGAGTTAAATTTATATCAGCATAAATGGGTCAGGACGCTTTTAATCACATATAAAAAGCGTCCTTTTTCTCACAATCAAATGATCATCGGCTTCTATAACGAAATCGATACGGATTAGTGTGTTACTCGTCTTCATCCTC > NC_000913/1894159‑1894569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |