| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,844,291 | G→A | A194V (GCC→GTC) | ynjI ← | DUF1266 domain‑containing protein YnjI |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,844,291 | 0 | G | A | 91.7% | 18.1 / ‑3.6 | 12 | A194V (GCC→GTC) | ynjI | DUF1266 domain‑containing protein YnjI |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (10/1); total (10/2) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.67e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.85e-01 | |||||||||||
GCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACT > NC_000913/1844150‑1844534 | gccCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGACTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCt > 1:111882/1‑194 (MQ=255) gCTATGATTAGCGCACTCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGACTCCATGGTCGCCagcaagcac > 1:329156/1‑129 (MQ=255) tATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGGCAGAAAGAAAATGc < 1:114017/134‑1 (MQ=255) cAATCAGAGATATAGTNTGAGGGAAAANCAGNNAATTNANTNAACAAGGCGATAACCTGCTCTGGGGCTTCNTCCATGTTTGCTTTAAAGGTATTNNCTNNNTGNNCGCCa < 2:243879/111‑1 (MQ=255) cAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTAAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGACTCCATGGTCGCCa > 1:243879/1‑111 (MQ=255) gaTATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGACTCCATGGTCGCCAGAAAGAACATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGCTCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCt > 1:122100/1‑251 (MQ=255) ntCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGACTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTcgcg > 1:192387/2‑251 (MQ=255) gAGGGAAAAACAGCAAATTTATTNAACAAGGCGANAACNNGCTCNGNGNCTTCCTCCATGTTTGCTTTAAAGGTATTGNCTCCATGGTCGCCAGAAAGAAAANNCTNNNTTNNGGcac < 2:239487/118‑1 (MQ=255) gAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACATGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGAATTGACTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGcac > 1:239487/1‑118 (MQ=255) catcaaGGCGATAACCTGCTCTGGGGCTTCTTCCATGTNTGCTTTAAANNTANTTACANCNNNGNNNCCNGAAAGAAAATGCTCCATGANGGNNCAAAAANTTTCGCTATCTTCGATACCCCATTGa < 2:68913/124‑1 (MQ=255) caacaaGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATCGACTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGa > 1:68913/1‑127 (MQ=255) naTAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGACTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAg > 1:37485/2‑228 (MQ=255) ccTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTCTTGACTCCATGGTCGCCAGTAAGAAAATGCTCCATTACGGCACAATAACTTTCGCTATCTTCGATCCCCAATTGATCCTCTACAGCCTCGCGTCTTTTACTTCTGATCTCGATCGAGTCAAAAGGAAGCCCATGCTATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGACCTCCAGCGTTTCAGACCATTGCTTATGATAGAAt > 1:315126/1‑251 (MQ=255) ggTATTGACTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACt > 1:135912/1‑251 (MQ=255) | GCCCATATTAGCTTCGCCGAGGATTTACCGGAGCTATGATTAGCGCAATCAGAGATATAGTCTGAGGGAAAAACAGCAAATTTATTCAACAAGGCGATAACCTGCTCTGGGGCTTCCTCCATGTTTGCTTTAAAGGTATTGGCTCCATGGTCGCCAGAAAGAAAATGCTCCATTAAGGCACAATAACTTTCGCTATCTTCGATACCCCATTGATCCTCTAAAGACTCGCGTCTTTTACTTATGATATCGATCGAGTCAAAAGGAAGCACATGATATTGGAAGGTATCTTTGCCAGGTTCAGGCTTTCGCGGCCAGAACTCCAGCGTTTCAGACCATTGCTTATGATAGAATCGATAAGGTGCGATCAATTGTAGCGCCTGTAACT > NC_000913/1844150‑1844534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |