| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,809,137 | G→A | L33L (CTG→TTG) | yniB ← | uncharacterized protein YniB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,809,137 | 0 | G | A | 90.0% | 17.9 / ‑3.4 | 10 | L33L (CTG→TTG) | yniB | uncharacterized protein YniB |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (3/6); total (4/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.15e-01 | |||||||||||
CCAGTCCGACAAAAATCAGGATGAAAATCACCCAGAACATAACGTTCACGCCACCATTAAAATTGGGCGTCGGGGAGTTATACCAGAATAGATTCAAAAAAGGCGTATTCGCCTGCATCATATCGATCATGACATGAGTAAAGTCGAGCATGACCGCATTAATGCCTTCCTTGTTTTCCTGCCGGGTATTCATAAATTTCAGCAAAGAAATCAATGTAGAGATCAATGCAGGTATAAAAATCACCCAACCCAAAATCCTTTTCAAAACAGCAATGCGTCCAGCTTGTTGATACGTCATGAGTTCTCCTTGATTAAGACGCGTCGTTTCACTTAGTTTACCTGTAGATATCTGTTTTCGCCCATTCTTTAAAGGCGATATGATAGGCGCTTAATCATAAGCACGGCTTAATACCTTACACATAATGCTCTAAAGGAGAGGTTGTAATG > NC_000913/1808936‑1809382 | ccAGTCCGACAAAAATCAGGATGAAAATCACCCAGAACATAACGTTCACGCCACCATTCAAATTGGGCGTCGGGGAGTTATACCAGACTAGCTTCAAAAAAGGCGTATTCGCCTGCATCATATCGATCATGACATGAGTAAAGTCGAGCATGACCGCATTAATGCCTTCCTTGTTTTCCTGCCGGGTATTCATAAATTTCAACAAAGAAATCAATGTAGAGATCAATGCAGGAATAAAAATCacccaaccc > 1:245598/1‑251 (MQ=255) tNGGNNAGTTNTACCAGAATAGATTCCAAAAAGGCNTATTCGCCTGCATCATATCGATCATGACATGNGNAAAGTCGAGCATGACCGCATTAATGCCTTCCTTGTTTTCCTGCCGGGTNTTCATAAATTNCAANNAAGANANCNATGTAGAGATCAATGCAGTTATAAAAATCNCCCAACCCAAAATCCTTTTCAAANNAGNNNTGNNTCCAg < 2:245598/213‑1 (MQ=255) gTTATACCAGAATAGATTCAAAAAAGGCGTATTCGCCTGCCTCATATCGATCATGACATGAGTCAAGACGAGCATGACCGCATTAATGACTTCCTTGTTTTCCTGCCGGGTATTCATAAATTTCAACACAGAAATCACTGTAGAGCTCTATGCAGGTATAAAAATCACCCAACCCAAAATCCTTTTCAAAAAAGCAAt > 1:314093/1‑198 (MQ=255) cAAAAAAGGCGTATTCGCCTGCATCATATCGATCATGACATGAGTAAAGTCGAGCATGACCGCATTAATGCCTTCCTTGTTTTCCTGCCGGGTATTCATAAATTTCAACAAAGAAATCAATGTAGAGATCAATGCAGGTATAAAAATCACCCAACCCAAAATCCTTTTCAAAACAGCAATGCGTCCATCTTGTTGATACGTCATGAGTTCTCCTTGATTAAGACGCGTCGTTTCACTTAGTTTACCTGTAg < 1:173201/251‑1 (MQ=255) gCCTGCATCATATCGATCATGACATGAGTAAAGTCGAGCATGACCGCATTAATGCCTTCCTTGTTTTCCTGCCGGGTATTCATAAATTTCAACAAAGAAATCAATGTAGAGATCAATGCAGGTATAAAAATCacn < 1:63874/135‑2 (MQ=255) atgacatgaGTAAATTCGAGCATGACCGCATTAGTGCCTTCCTTGTTTTCCTGCCGGGTATTCATAAATTTCAACAAAGATATCAATGTAGAGATCAATGCAGGTATAAAAATCacccaacc < 1:324546/122‑1 (MQ=255) gacatgaGTAAAGTCGAGCATGACCGCATTAATGCCTTCCTTGTTTTCCTGCCGGGTATTCATAAATTTCAACAAAGAAATCAATGTAGAGATCAATGCAgg > 1:72714/1‑102 (MQ=255) ttCATAAATTTCAACAAAGAAATCAATGTAGAGATCAATGCAGGTATAAAAATCACCCAACCCAAAATCCTTTTCAAAACAGCAATGCGTCCAGCTTGTTGATACGTCATGAGTTCTCCTTGATTAAGACGCGTCGTTTCACTTAGTTTACCTGTAGAGATCTGTTTTCGCCCATTCTTTAAAGGCGATATGATAGGCGCTTAATCATAAGCACGGCTTa < 1:132338/220‑1 (MQ=255) ttCAACAAAGAAATCAATGTAGAGATCAATGCAGGTATAAAAATCACCCAACCCAAAATCCTTTTCAAAACAGCAATGCGTCCAGCTTGTTGATACGTCATGAGTTCTCCTTGATTAAGACGCGTCGTTTCACTTAGTTTACCTGTAGATATCGTTTTTCGCCCATTCTTTAAAGGCGATATGATAGGCGCTAAATCATAAGCACGGCGTAATACCTTACACATAATGCTCTAAAGGAGAGGTTGTAAtn < 1:33847/250‑2 (MQ=255) aGCAAAGAAATCAATGTAGAGATCAATGCAGGTATAAAAATCACCCAACCCAAAATCCTTTTCAAAACAGCAATGCGTCCAGCTTGTTGATACGTCATGAGTTCTCCTTGATTAAGACGCGTCGTTTCACTTAGTTTACCTGTAGATATCTGTTTTCGCCCATTCTTTa > 1:5128/1‑169 (MQ=255) | CCAGTCCGACAAAAATCAGGATGAAAATCACCCAGAACATAACGTTCACGCCACCATTAAAATTGGGCGTCGGGGAGTTATACCAGAATAGATTCAAAAAAGGCGTATTCGCCTGCATCATATCGATCATGACATGAGTAAAGTCGAGCATGACCGCATTAATGCCTTCCTTGTTTTCCTGCCGGGTATTCATAAATTTCAGCAAAGAAATCAATGTAGAGATCAATGCAGGTATAAAAATCACCCAACCCAAAATCCTTTTCAAAACAGCAATGCGTCCAGCTTGTTGATACGTCATGAGTTCTCCTTGATTAAGACGCGTCGTTTCACTTAGTTTACCTGTAGATATCTGTTTTCGCCCATTCTTTAAAGGCGATATGATAGGCGCTTAATCATAAGCACGGCTTAATACCTTACACATAATGCTCTAAAGGAGAGGTTGTAATG > NC_000913/1808936‑1809382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |