| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,762,757 | G→A | T418I (ACC→ATC) | sufB ← | Fe‑S cluster scaffold complex subunit SufB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,762,757 | 0 | G | A | 84.6% | 19.6 / ‑0.2 | 13 | T418I (ACC→ATC) | sufB | Fe‑S cluster scaffold complex subunit SufB |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (4/7); total (4/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.67e-01 | |||||||||||
TGTGCTTCAACGGCAAATTCCAACGGCAGCTCCGAGAACACGTCTTTGCAGAAACCGTTAACAATCATCGAGATGGCGTCTTCTTCGCTGATCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACTCAACATACGGGAAGGTATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTGCGCGCATTGGTTGCCGTCGGCATGATTTTCACTAAGCCGCGATAACTGTTCTGACTATGTCCGGCAGAGATCCCTTTCGAGATAATGGTCGATTTGGTGTTTTTACCGATGTGGATCATCTTGGTGCCGGTATCCGCTTGCTGATGACCGCTGGTCAGCGCCACTGAGTAAAACTCACCAATGGAGTTATCGC > NC_000913/1762562‑1763003 | tgtgCTTCAACGGCAAATTCCAACGGCAGCTCCGAGAACACGTCTTTGCAGAAACCGTTAACAATCATCGAGATGGCGTCTTCTTCGCTGATCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACTCAACATACGGGAAGATATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTgc < 1:27842/250‑1 (MQ=255) aCGGCAAATTCCAACGGCAGCTCCGAGAACACGTCTTTGCAGAAACCGTTAACAATCATCGAGATGGCGTCTTCTTCGCTGATCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCCATACGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACTCAACATACGGGAAGATATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTGCGCGCATTGGt > 1:214088/1‑251 (MQ=255) ggCAAATTCCAACGGCAGCTCCGAGAACACGTCTTTGCAGAAACCGTTAACAATCATCGAGATGGCGGCTTCTTCGCTGAGCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACTCAACATACGGGAAGATATGCGCCCCACAATTAGCGcc < 1:13485/207‑1 (MQ=255) ccAACGGCAGCTCCGAGAACACGTCTTTGTAGAAACCGTTAACAATCATCGAGATGGCGTCTTCTTCGCTGATCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTGGCCGCGTGTTCCAGTGGCTCACTATTGTTACGACACTCAACATACGGGAAGGTATGCGCCCCACAATTAgcn < 1:35216/197‑2 (MQ=255) cacTGATCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACGCAACATACGGGAAGATATGCTCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTgcgc < 1:288131/165‑1 (MQ=255) gTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCATCGTGTTCCAGTTGCGCACTATTGTTACGACCCTCACCATCCGGGAAGATATGCGCCCCACAATTAgcgc > 1:283566/1‑120 (MQ=255) gcaggcagTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCAGTATTGTTGCGACACTCAACATACGGGAAGATATGCGCCTCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAGATTGCGCGCACTGGTGGCCGGCGGCATTATTTTCACTAAGCCGCGATAACTGTTCTGACTATGTCCGGc < 1:162071/214‑1 (MQ=255) gTAAAACAGTTGATCTTCACCAATGCGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACTCAACATACGGGAAGATATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTg < 1:206800/142‑1 (MQ=255) gATCTTCACCAATACGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCACTATTGTTGCGACACTCAACATACTGGAAGATATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTGCGCGCATTGGTTGCCGTCGGCATGATTTTc < 1:134573/161‑1 (MQ=255) gCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACTCAACATACGGGAAGATATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTNNCACTGan > 2:17524/1‑96 (MQ=255) gCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACTCAACATACGGGAAGATATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTGCGCGCATTGGTTGCCGTCGGCATGATTTTCACTAAGCCGCGATAACTGTTCTGACTATGTCCGGCAGAGATCCCTTTCGAGATAATGGTCGATTTGGTGTTTTTACCGATGTGGa < 1:17524/220‑1 (MQ=255) ggAAGNTCTGANCNNCACAATTAGCGCCAATCAGNATTGAGTCGCACTGANTGAANTTGCGNGCNtn > 2:130091/1‑66 (MQ=255) ggAAGGTATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTGCGCGCATTGGTGGCCGTCGGCATGATTGTCACTAAGCCGCGATAACTGTTCTGACTATGTCCGGCAGAGATCCCTTTCGAGAt < 1:130091/142‑1 (MQ=255) gAAGATATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTGCGCGCATTGGTTGCCGTCGGCATGCTTTTCACTAAGCCGCGATAACTGTTCTGACTATGTCCGGCAGAGATCCCTTTCGAGATAATGGTCGATTTGGTGTTTTTACCGATGTGGATCATCTTGGTGCCGGTATCCGCTTGCTGATGACCGCTGGTCAGCGCCACTGAGTAAAACTCACCAATGGAGTTATcgc > 1:303236/1‑251 (MQ=255) | TGTGCTTCAACGGCAAATTCCAACGGCAGCTCCGAGAACACGTCTTTGCAGAAACCGTTAACAATCATCGAGATGGCGTCTTCTTCGCTGATCCCGCGTTGCAGGCAGTAAAACAGTTGATCTTCACCAATACGTGATGTCGTTGCCTCGTGTTCCAGTTGCGCACTATTGTTACGACACTCAACATACGGGAAGGTATGCGCCCCACAATTAGCGCCAATCAGCATTGAGTCGCACTGAGTGAAATTGCGCGCATTGGTTGCCGTCGGCATGATTTTCACTAAGCCGCGATAACTGTTCTGACTATGTCCGGCAGAGATCCCTTTCGAGATAATGGTCGATTTGGTGTTTTTACCGATGTGGATCATCTTGGTGCCGGTATCCGCTTGCTGATGACCGCTGGTCAGCGCCACTGAGTAAAACTCACCAATGGAGTTATCGC > NC_000913/1762562‑1763003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |